Factsheet for Os04t0439900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0492000-01
Os10t0492101-00
Os10t0492300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	Os10t0492000-01	AT1G06950.1	17535810
AT5G16620.1	Os10t0492101-00	AT1G06950.1	17535810
AT5G16620.1	Os10t0492300-01	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G308600.4	Wheat	plastid	80.19	80.94
TraesCS2B01G325100.2	Wheat	plastid	79.49	80.24
TraesCS2D01G306800.1	Wheat	plastid	79.02	80.14
HORVU2Hr1G076790.7	Barley	plastid	79.49	80.05
EES12206	Sorghum	plastid	79.49	78.21
Zm00001d025453_P006	Maize	plastid	79.49	75.78
Zm00001d023857_P001	Maize	plastid	29.37	73.68
Zm00001d003612_P001	Maize	plastid	49.42	69.74
GSMUA_Achr11P...	Banana	plastid	36.6	54.14
PGSC0003DMT400059853	Potato	nucleus, plastid	37.53	53.14
GSMUA_Achr8P16240_001	Banana	nucleus	35.9	53.1
KRH30716	Soybean	endoplasmic reticulum	50.82	50.82
VIT_18s0041g01360.t01	Wine grape	plastid	51.52	50.69
KRG98060	Soybean	endoplasmic reticulum	50.82	50.46
Solyc11g020300.1.1	Tomato	plastid	47.32	45.82
CDX85495	Canola	plastid	46.15	44.0
AT5G16620.1	Thale cress	plastid	45.69	43.85
CDY38098	Canola	plastid	45.69	43.56
CDX69438	Canola	plastid	45.92	43.11
Bra008608.1-P	Field mustard	plastid	45.92	43.11
CDY49648	Canola	plastid	44.06	41.54
Bra023577.1-P	Field mustard	plastid	33.33	37.05

Protein Annotations

Gene3D:1.10.260.100	MapMan:23.1.3.3	EntrezGene:4335926	EMBL:AK098870	ProteinID:BAF14785.1	ProteinID:BAS89336.1
ProteinID:EEE61055.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009658
GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0045037
EnsemblPlantsGene:Os04g0439900	EnsemblPlants:Os04t0439900-01	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	UniProt:Q0JD02	SMART:SM00727
InterPro:STI1_HS-bd	UniParc:UPI000021C99F	RefSeq:XP_015636988.1	SEG:seg	:	:

Description

Similar to Translocon Tic40 precursor. (Os04t0439900-01);Similar to Translocon Tic40 precursor. (Os04t0439900-02);Similar to Translocon Tic40 precursor. (Os04t0439900-03)

Coordinates

chr4:-:21886998..21892936

Molecular Weight (calculated)

46327.9 Da

IEP (calculated)

5.019

GRAVY (calculated)

-0.447

Length

429 amino acids

Sequence
(BLAST)

001: MESLVLASSC SASPRLPPLS AARRRRPSSQ TLPATAAASG RRGAGRSKLV VVAAAAAAAR GSGNGFEGLK TNGFASMSSS TNSENMSTGT GSLPPMPPPS
101: SYIGSPVFWI GVGVALSAAF SMVSSMVKKY AMQQAFKSMM TQAPPNTFGS NSPFPFAMPP QAAPAAPSSY PYSQPRKDTS PQSATVDVSA TKVEATGTLE
201: EADVAEQPKK KFAFVDVSPE ELQQKELQSS LETVDVKSES KQSETMEDTE QKAPTNGTAF KMNEGSASGT TESSNSGPML SVDTIEKMME DPAVQKMVYP
301: YLPEEMRNPD SFKWMLQNPM YRQQLQDMLN NMGGSPDQWD NRMLDHLKNF DLSSPEVRQQ FAQVGMTPEE VVSKIMANPE VAVAFQNPKI QTAIMDCSQN
401: PLNIVKYQND KEVMDVFMKI SQIFPQING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.