Factsheet for VIT_18s0041g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g07730.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	VIT_06s0004g07730.t01	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059853	Potato	nucleus, plastid	48.39	69.64
KRH30716	Soybean	endoplasmic reticulum	63.76	64.8
KRG98060	Soybean	endoplasmic reticulum	63.99	64.58
GSMUA_Achr11P...	Banana	plastid	41.51	62.41
GSMUA_Achr8P16240_001	Banana	nucleus	41.28	62.07
Solyc11g020300.1.1	Tomato	plastid	62.84	61.85
CDY38098	Canola	plastid	57.8	56.0
AT5G16620.1	Thale cress	plastid	57.34	55.93
CDX85495	Canola	plastid	57.34	55.56
Bra008608.1-P	Field mustard	plastid	55.96	53.39
CDX69438	Canola	plastid	55.96	53.39
CDY49648	Canola	plastid	54.13	51.87
Os04t0439900-01	Rice	plastid	50.69	51.52
Bra023577.1-P	Field mustard	plastid	44.04	49.74
TraesCS2D01G306800.1	Wheat	plastid	47.94	49.41
HORVU2Hr1G076790.7	Barley	plastid	48.17	49.3
TraesCS2A01G308600.4	Wheat	plastid	47.94	49.18
TraesCS2B01G325100.2	Wheat	plastid	47.94	49.18
EES12206	Sorghum	plastid	49.08	49.08
Zm00001d025453_P006	Maize	plastid	48.85	47.33
Zm00001d003612_P001	Maize	plastid	23.85	34.21
Zm00001d023857_P001	Maize	plastid	13.07	33.33

Protein Annotations

Gene3D:1.10.260.100	EntrezGene:100265473	wikigene:100265473	MapMan:23.1.3.3	ProteinID:CBI39284	ProteinID:CBI39284.3
UniProt:D7U970	EMBL:FN596744	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0045037	EntrezGene:LOC100265473	wikigene:LOC100265473	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	SMART:SM00727
InterPro:STI1_HS-bd	TIGR:TC56948	UniParc:UPI0001985557	ArrayExpress:VIT_18s0041g01360	EnsemblPlantsGene:VIT_18s0041g01360	EnsemblPlants:VIT_18s0041g01360.t01
unigene:Vvi.3409	RefSeq:XP_002282574	RefSeq:XP_002282574.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:26047731..26076991

Molecular Weight (calculated)

47432.8 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.498

Length

436 amino acids

Sequence
(BLAST)

001: MDSLTLVSSP KLVLGHSPSN PRHISCAHSS FSLPLLFRKP RKFIAASQSG ASPRTPRHVV ETKLGTECFA SISSSSQGTS SVGVNPQFSP PPPSSNIGSP
101: LFWIGVGVGL SALFSWVASN LKKYAMQQAF KTLMGQMDSQ NNQFNTTTFS PGSPFPFPMP PPSGPSTSHS GPTTSPSGPT TSPSTVAAQS MVTVDVPATK
201: VETPPATDVK DDIEKKNEQN KYAFVDVSPE ETLQESPFEN FEESTETSSS KDAQFSAGVS QNGTPPRPGM GVSEDSQSTR NANPFLSVDA LEKMMEDPTV
301: QKMVYPYLPE EMRNPTTFKW MLQNPQYRQQ LQDMLNNMGG GAEWDNRMMD NLKNFDLSSP EVKQQFDQIG LTPEEVISKI MANPDVALAF QNPRIQAAIM
401: DCSQNPLSIA KYQNDKEVMD VFNKISELFP GVSGPP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.