Factsheet for GSMUA_Achr8P16240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	GSMUA_Achr11P...	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	82.76	82.76
PGSC0003DMT400059853	Potato	nucleus, plastid	61.38	58.75
VIT_18s0041g01360.t01	Wine grape	plastid	62.07	41.28
KRH30716	Soybean	endoplasmic reticulum	60.69	41.03
Solyc11g020300.1.1	Tomato	plastid	62.41	40.86
KRG98060	Soybean	endoplasmic reticulum	60.34	40.51
AT5G16620.1	Thale cress	plastid	56.9	36.91
CDY38098	Canola	plastid	57.24	36.89
CDX85495	Canola	plastid	56.9	36.67
Bra008608.1-P	Field mustard	plastid	57.59	36.54
CDX69438	Canola	plastid	57.59	36.54
EES12206	Sorghum	plastid	54.14	36.01
Os04t0439900-01	Rice	plastid	53.1	35.9
TraesCS2D01G306800.1	Wheat	plastid	50.34	34.52
CDY49648	Canola	plastid	54.14	34.51
Zm00001d025453_P006	Maize	plastid	53.1	34.22
TraesCS2A01G308600.4	Wheat	plastid	50.0	34.12
TraesCS2B01G325100.2	Wheat	plastid	50.0	34.12
HORVU2Hr1G076790.7	Barley	plastid	50.0	34.04
Zm00001d023857_P001	Maize	plastid	20.0	33.92
Bra023577.1-P	Field mustard	plastid	37.24	27.98
Zm00001d003612_P001	Maize	plastid	21.03	20.07

Protein Annotations

EnsemblPlants:GSMUA_Achr8P16240_001	EnsemblPlants:GSMUA_Achr8T16240_001	EnsemblPlantsGene:GSMUA_Achr8G16240_001	Gene3D:1.10.260.100	Gene3D:3.40.190.140	InterPro:IPR038108
InterPro:RPN13_C_sf	InterPro:STI1_HS-bd	SEG:seg	SMART:SM00727	UniParc:UPI000294883B	UniProt:M0TQX7
MapMan:23.1.3.3	:	:	:	:	:

Description

translocon Tic40, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G16240_001]

Coordinates

chr8:-:14039350..14054321

Molecular Weight (calculated)

31904.5 Da

IEP (calculated)

4.277

GRAVY (calculated)

-0.643

Length

290 amino acids

Sequence
(BLAST)

001: MDQAAPQGGQ FNNPSFGPGL PFPFPSTVSS PPTASTLSTA HVSSQQPVTV DVPATKVEST STPEIGDETQ LEEAKPKKAA FVDVSPEELL QSDPSYLKES
101: IKASPVETQS VKEVPSNGPV KQDGSAPNGQ SQSRKSPSPL SVEALEKMME DPTVQKMVYP YLPEEMRNPE TFKWMMQNPQ FRQQMQDMLS NMGGNNEWDN
201: RLTESLKNFN LSSPEIKQQF EQVGLTPEEV ISKIMENPDV AMAFQNPKVQ AAILDCSQNP LSIAKYQNDK EVMDVFTKIS ELFPGVSGYP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.