Factsheet for HORVU2Hr1G076790.7

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G043900.4
HORVU1Hr1G043940.3
HORVU5Hr1G048520.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	HORVU1Hr1G043900.4	AT1G06950.1	17535810
AT5G16620.1	HORVU1Hr1G043940.3	AT1G06950.1	17535810
AT5G16620.1	HORVU5Hr1G048520.1	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G308600.4	Wheat	plastid	95.77	96.0
TraesCS2B01G325100.2	Wheat	plastid	94.6	94.82
TraesCS2D01G306800.1	Wheat	plastid	91.55	92.2
Os04t0439900-01	Rice	plastid	80.05	79.49
EES12206	Sorghum	plastid	78.17	76.38
Zm00001d025453_P006	Maize	plastid	76.29	72.22
Zm00001d023857_P001	Maize	plastid	27.23	67.84
Zm00001d003612_P001	Maize	plastid	46.95	65.79
GSMUA_Achr11P...	Banana	plastid	35.21	51.72
PGSC0003DMT400059853	Potato	nucleus, plastid	36.15	50.83
GSMUA_Achr8P16240_001	Banana	nucleus	34.04	50.0
KRH30716	Soybean	endoplasmic reticulum	49.06	48.72
KRG98060	Soybean	endoplasmic reticulum	49.06	48.38
VIT_18s0041g01360.t01	Wine grape	plastid	49.3	48.17
Solyc11g020300.1.1	Tomato	plastid	46.01	44.24
CDX85495	Canola	plastid	46.24	43.78
CDX69438	Canola	plastid	46.95	43.76
Bra008608.1-P	Field mustard	plastid	46.95	43.76
AT5G16620.1	Thale cress	plastid	45.54	43.4
CDY38098	Canola	plastid	45.31	42.89
CDY49648	Canola	plastid	45.07	42.2
Bra023577.1-P	Field mustard	plastid	33.57	37.05

Protein Annotations

Gene3D:1.10.260.100	MapMan:23.1.3.3	EMBL:AK366375	UniProt:F2DR57	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0045037	EnsemblPlantsGene:HORVU2Hr1G076790	EnsemblPlants:HORVU2Hr1G076790.7	PANTHER:PTHR22904
PANTHER:PTHR22904:SF490	SMART:SM00727	InterPro:STI1_HS-bd	UniParc:UPI000200742A	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DR57]

Coordinates

chrchr2H:+:554011351..554021557

Molecular Weight (calculated)

45944.2 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.442

Length

426 amino acids

Sequence
(BLAST)

001: MESLVLASSC SASPRLPLLS ASSRPSRPLP AAPLSAAAGR RGSRRPRLVV SAASRGSRNV SDGLYTKGFA SISSSTSSEN TSTGTGTLPP MPPPSSYIGS
101: PVFWIGIGVA LSAAFSMVSS MVKKYAMEQA FKSMMTQAPP NTFGANSPFP FSMPPQAGST APSSYPYSGP RKNTPKGATV DVSASDVAAT GSSEAADVAE
201: TSKPSKKFAF VDVSPEELQK QKELQSSLET VDIRSDSTGS ETKDDSEQQV PTNGAAFKPS EDSSTWTTES SKSGPMLSID TIEKMMEDPA VQKMVYPYLP
301: EEMRNPESFK SMLQNPMYRQ QLEDMLNNMG ASPDQWDNRM VDHLKNFDLS SPEVRQQFAQ VGMTPEEVVS KIMANPEVAV AFQNPKIQTA IMDCSQNPLN
401: IVKYQNDQEV MDVFMKISQI FPQING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.