Factsheet for TraesCS2B01G325100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G165700.1
TraesCS1A01G165800.1
TraesCS1B01G182400.1
TraesCS1B01G182500.1
TraesCS1D01G174900.1
TraesCS1D01G175000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	TraesCS1A01G165700.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1A01G165800.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1B01G182400.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1B01G182500.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1D01G174900.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1D01G175000.1	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G308600.4	Wheat	plastid	98.82	98.82
TraesCS2D01G306800.1	Wheat	plastid	94.59	95.04
HORVU2Hr1G076790.7	Barley	plastid	94.82	94.6
Os04t0439900-01	Rice	plastid	80.24	79.49
EES12206	Sorghum	plastid	78.35	76.38
Zm00001d025453_P006	Maize	plastid	76.0	71.78
Zm00001d023857_P001	Maize	plastid	28.24	70.18
Zm00001d003612_P001	Maize	plastid	47.29	66.12
GSMUA_Achr11P...	Banana	plastid	35.76	52.41
PGSC0003DMT400059853	Potato	nucleus, plastid	36.47	51.16
GSMUA_Achr8P16240_001	Banana	nucleus	34.12	50.0
KRH30716	Soybean	endoplasmic reticulum	49.18	48.72
KRG98060	Soybean	endoplasmic reticulum	49.18	48.38
VIT_18s0041g01360.t01	Wine grape	plastid	49.18	47.94
CDX85495	Canola	plastid	46.82	44.22
Solyc11g020300.1.1	Tomato	plastid	45.88	44.02
CDX69438	Canola	plastid	47.29	43.98
Bra008608.1-P	Field mustard	plastid	47.29	43.98
AT5G16620.1	Thale cress	plastid	46.12	43.85
CDY38098	Canola	plastid	45.65	43.11
CDY49648	Canola	plastid	45.18	42.2
Bra023577.1-P	Field mustard	plastid	34.35	37.82

Protein Annotations

EnsemblPlants:TraesCS2B01G325100.2	EnsemblPlantsGene:TraesCS2B01G325100	Gene3D:1.10.260.100	InterPro:STI1_HS-bd	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490
SEG:seg	SMART:SM00727	MapMan:23.1.3.3	:	:	:

Description

No Description!

Coordinates

chr2B:-:464674251..464680315

Molecular Weight (calculated)

45686.9 Da

IEP (calculated)

5.135

GRAVY (calculated)

-0.423

Length

425 amino acids

Sequence
(BLAST)

001: MESLVLASSC SASPRLPLLS AASRPSRPLS AAPLSAGAGR RGARRPRLVV SAASRGSRNV SDGFNTKGFA SISSSTSTEN TSTGTGTVPP MPPPSSYIGS
101: PVFWIGVGVA LSAAFSMVSS MVKKYAMEQA FKSMMTQAPQ NTFGANSPFP FSMPPQAGST APSSYPYSGP RKNTPKGATV DVSATEVAAT GSSEAADVAE
201: TSKPSKKFAF VDVSPEELQK QKELQSSLQT VDVKSDSTES ETKGDTEQVP TNGAAFKPSE DSSTWTTESS KSGPMLSIDT IEKMMEDPAV QKMVYPYLPE
301: EMRNPDSFKS MLQNPMYRQQ LEDMLNNMGA SPGQWDNRMV DHLKNFDLSS PEVRQQFAQV GMTPEEVVAK IMANPEVAVA FQNPKIQTAI MDCSQNPLNI
401: VKYQNDQEVM DVFMKISQIF PQING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.