Factsheet for Bra023577.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015538.1-P
Bra030666.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	Bra015538.1-P	AT1G06950.1	17535810
AT5G16620.1	Bra030666.1-P	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85495	Canola	plastid	97.41	83.56
AT5G16620.1	Thale cress	plastid	82.38	71.14
Bra008608.1-P	Field mustard	plastid	82.9	70.02
VIT_18s0041g01360.t01	Wine grape	plastid	49.74	44.04
KRG98060	Soybean	endoplasmic reticulum	47.41	42.36
KRH30716	Soybean	endoplasmic reticulum	46.63	41.96
PGSC0003DMT400059853	Potato	nucleus, plastid	32.38	41.25
Solyc11g020300.1.1	Tomato	plastid	44.3	38.6
GSMUA_Achr11P...	Banana	plastid	28.76	38.28
GSMUA_Achr8P16240_001	Banana	nucleus	27.98	37.24
TraesCS2B01G325100.2	Wheat	plastid	37.82	34.35
TraesCS2A01G308600.4	Wheat	plastid	37.31	33.88
HORVU2Hr1G076790.7	Barley	plastid	37.05	33.57
Os04t0439900-01	Rice	plastid	37.05	33.33
TraesCS2D01G306800.1	Wheat	plastid	36.27	33.1
EES12206	Sorghum	plastid	36.27	32.11
Zm00001d025453_P006	Maize	plastid	36.79	31.56
Zm00001d003612_P001	Maize	plastid	24.09	30.59
Zm00001d023857_P001	Maize	plastid	11.14	25.15

Protein Annotations

EnsemblPlants:Bra023577.1	EnsemblPlants:Bra023577.1-P	EnsemblPlantsGene:Bra023577	Gene3D:1.10.260.100	SEG:seg	UniParc:UPI0002543050
UniProt:M4E474	MapMan:23.1.3.3	:	:	:	:

Description

AT5G16620 (E=2e-071) PDE120, TIC40, ATTIC40 | TIC40

Coordinates

chrA02:+:4013194..4016232

Molecular Weight (calculated)

41707.1 Da

IEP (calculated)

6.108

GRAVY (calculated)

-0.423

Length

386 amino acids

Sequence
(BLAST)

001: MENLTLLSSS SSSPKLLIGC NFTSSLKTPV GFSRRTPKIT LRCSKTSASA QSQSPEKAGE TVVVKHRRSK AFASIFSSSL DQQTTSVAYP SAAVPPPSSS
101: SSTIGSPLFW IGVGVGLSAL FSWATSNLKK YAMQTAMKTM MNQMNTQNSQ FNNPGFPTGP GSGSPFPFPF PPQTTPTPSP FQSQSQSSSA TVDVTATKVD
201: TPPSTKPQPT PVKNIEVDKP SVVLEENKPK KEEKNYAFED VSPEETAKES PFSNYAEVSE TSAPKEARLF EDVLQNGSAP ANGATASEVF QSLALVFLFD
301: GFRNNMSGSG EWDKRMTETL KNFDLNSPEV KQQFDQIGLT PEEVISKIMQ NPDVAMAFQN PRVQAALMEV MDVFNKISQL FPGMTG

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.