Factsheet for Solyc11g020300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g031780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	Solyc09g031780.2.1	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059853	Potato	nucleus, plastid	65.01	95.05
VIT_18s0041g01360.t01	Wine grape	plastid	61.85	62.84
GSMUA_Achr11P...	Banana	plastid	41.08	62.76
GSMUA_Achr8P16240_001	Banana	nucleus	40.86	62.41
KRH30716	Soybean	endoplasmic reticulum	58.01	59.91
KRG98060	Soybean	endoplasmic reticulum	57.79	59.26
CDY38098	Canola	plastid	53.5	52.67
AT5G16620.1	Thale cress	plastid	53.05	52.57
CDX85495	Canola	plastid	51.92	51.11
Bra008608.1-P	Field mustard	plastid	52.37	50.77
CDX69438	Canola	plastid	52.14	50.55
CDY49648	Canola	plastid	49.44	48.13
Os04t0439900-01	Rice	plastid	45.82	47.32
TraesCS2D01G306800.1	Wheat	plastid	44.47	46.57
TraesCS2A01G308600.4	Wheat	plastid	44.24	46.12
HORVU2Hr1G076790.7	Barley	plastid	44.24	46.01
TraesCS2B01G325100.2	Wheat	plastid	44.02	45.88
EES12206	Sorghum	plastid	44.47	45.18
Bra023577.1-P	Field mustard	plastid	38.6	44.3
Zm00001d025453_P006	Maize	plastid	44.24	43.56
Zm00001d023857_P001	Maize	plastid	12.87	33.33
Zm00001d003612_P001	Maize	plastid	21.44	31.25

Protein Annotations

Gene3D:1.10.260.100	MapMan:23.1.3.3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0045037	UniProt:K4D6Y2	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	SMART:SM00727
InterPro:STI1_HS-bd	EnsemblPlantsGene:Solyc11g020300.1	EnsemblPlants:Solyc11g020300.1.1	TMHMM:TMhelix	UniParc:UPI00027694F3	SEG:seg

Description

Protein TIC 40, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G16620) UniProtKB/Swiss-Prot;Acc:Q9FMD5]

Coordinates

chr11:-:10728385..10741180

Molecular Weight (calculated)

47800.6 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.421

Length

443 amino acids

Sequence
(BLAST)

001: MENIGIVSSP KMVLGLSSNS VISSKPFFGL PHLPKRPFKN GRTVRPTTCF EVVSCFQGPR LTKKIVLGKS GRGSFASTTT SGGKQTSSVG VNPQFSAPSP
101: PSQMGSPLFW IGVGVGFSAL FAWVASYLKK YAMQQALKTM MGQMNGQNSQ FSNTAFSPGP GSPFPFPFPP PPVSGPASSS PPPPTASSSS TPSASFASQP
201: VTVDVSATKV EEPPTVNVKN DKEAEKEPKK NAFVDISPDE TFQKGAFENF KDSAETAAVT VDQVTQNGAA SQSGFGSNTS DSTSSTGKSN PLLSVDALEK
301: MMEDPTVQKM VYPYLPEEMR NPTTFKWMLQ NPQYRQQLQD MMNNMGGNPE WDNRMMDSLK NFDLSSPEIK QQFDQIGLTP EEVISKIMAN PDVAMAFQNP
401: RVQAAIMDCS QNPLSIAKYQ NDKEVMDVFN KISELFPGVS GAP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.