CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86508
CDX94311
CDY06840
CDY10236
CDY15593
CDY54889

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	CDX86508	AT1G06950.1	17535810
AT5G16620.1	CDX94311	AT1G06950.1	17535810
AT5G16620.1	CDY06840	AT1G06950.1	17535810
AT5G16620.1	CDY10236	AT1G06950.1	17535810
AT5G16620.1	CDY15593	AT1G06950.1	17535810
AT5G16620.1	CDY54889	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69438	Canola	plastid	92.09	91.68
CDX85495	Canola	plastid	81.98	82.89
CDY38098	Canola	plastid	81.54	82.44
AT5G16620.1	Thale cress	plastid	79.12	80.54
PGSC0003DMT400059853	Potato	nucleus, plastid	37.8	56.77
GSMUA_Achr8P16240_001	Banana	nucleus	34.51	54.14
VIT_18s0041g01360.t01	Wine grape	plastid	51.87	54.13
GSMUA_Achr11P...	Banana	plastid	34.29	53.79
KRG98060	Soybean	endoplasmic reticulum	50.77	53.47
KRH30716	Soybean	endoplasmic reticulum	50.33	53.38
Solyc11g020300.1.1	Tomato	plastid	48.13	49.44
TraesCS2B01G325100.2	Wheat	plastid	42.2	45.18
HORVU2Hr1G076790.7	Barley	plastid	42.2	45.07
TraesCS2A01G308600.4	Wheat	plastid	41.76	44.71
TraesCS2D01G306800.1	Wheat	plastid	41.54	44.68
Os04t0439900-01	Rice	plastid	41.54	44.06
EES12206	Sorghum	plastid	41.54	43.35
Zm00001d025453_P006	Maize	plastid	41.54	42.0
Zm00001d003612_P001	Maize	plastid	22.86	34.21
Zm00001d023857_P001	Maize	plastid	12.53	33.33

Protein Annotations

EnsemblPlants:CDY49648	EnsemblPlantsGene:GSBRNA2T00093516001	Gene3D:1.10.260.100	InterPro:STI1_HS-bd	ProteinID:CDY49648	ProteinID:CDY49648.1
SEG:seg	SMART:SM00727	UniParc:UPI0004EB1FB9	UniProt:A0A078IKQ8	MapMan:23.1.3.3	:

Description

BnaC09g41260DBnaC09g41260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKQ8]

Coordinates

chrLK032850:-:24002..27296

Molecular Weight (calculated)

49573.4 Da

IEP (calculated)

5.210

GRAVY (calculated)

-0.555

Length

455 amino acids

Sequence
(BLAST)

001: MENLTTLVSC SSSPKLLIGG NFTSSLKPPV GFSRRTPKIL LRRSKTSASS AQSHSPSENA GEIVVVKHKT KAFASIFSST SDKQTTSVAS PSAAVPPPSS
101: SSTIGSPLFW IGVGVGLSAL FSWVTSNAKK YAMQTAMKTM MNQMNTQNSQ FNNPGFPTGA GAGSGSPFPF PFPPQTSPTT SPFQPQSQSS GATVDVTATK
201: VDRPPVSKPQ PTPIPPTKSI EVYKPSVVVE EDKAMKEEKN YAFEDVSPEE TTKESPFSNY EEVSETSAPK ETRLFDDVLQ NGAAPANGAT ASEGFQSLGA
301: GKGWAGGSVE VLEKMIEDPT FQKMLYPHLP EEMRNPETFK WVRKNPQYRQ QLQDMLNNMS ESGEWDKRMT ETLKNFDPNS PEVKQGFDQL GLTPEEVISK
401: IMENPDVSMA FQNPRVEAAL MDCSENPMNI MKYQNDKEVM DVFNKISQLF PGLTG

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.