Factsheet for Zm00001d003612_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004430_P001
Zm00001d032615_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	Zm00001d004430_P001	AT1G06950.1	17535810
AT5G16620.1	Zm00001d032615_P002	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023857_P001	Maize	plastid	52.63	93.57
EES12206	Sorghum	plastid	81.58	56.88
Zm00001d025453_P006	Maize	plastid	78.29	52.89
Os04t0439900-01	Rice	plastid	69.74	49.42
TraesCS2A01G308600.4	Wheat	plastid	66.45	47.53
TraesCS2B01G325100.2	Wheat	plastid	66.12	47.29
HORVU2Hr1G076790.7	Barley	plastid	65.79	46.95
TraesCS2D01G306800.1	Wheat	plastid	64.47	46.34
KRH30716	Soybean	endoplasmic reticulum	38.16	27.04
KRG98060	Soybean	endoplasmic reticulum	37.83	26.62
CDX85495	Canola	plastid	36.84	24.89
Bra023577.1-P	Field mustard	plastid	30.59	24.09
AT5G16620.1	Thale cress	plastid	35.2	23.94
VIT_18s0041g01360.t01	Wine grape	plastid	34.21	23.85
Bra008608.1-P	Field mustard	plastid	35.53	23.63
CDY38098	Canola	plastid	34.87	23.56
CDX69438	Canola	plastid	35.2	23.41
CDY49648	Canola	plastid	34.21	22.86
Solyc11g020300.1.1	Tomato	plastid	31.25	21.44
GSMUA_Achr8P16240_001	Banana	nucleus	20.07	21.03
GSMUA_Achr11P...	Banana	plastid	20.07	21.03
PGSC0003DMT400059853	Potato	nucleus, plastid	19.08	19.14

Protein Annotations

EnsemblPlants:Zm00001d003612_P001	EnsemblPlants:Zm00001d003612_T001	EnsemblPlantsGene:Zm00001d003612	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ProteinID:ONM17251.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000842C7C5	UniProt:A0A1D6EA37	MapMan:23.1.3.3

Description

Translocon Tic40

Coordinates

chr2:+:50120976..50124154

Molecular Weight (calculated)

32420.3 Da

IEP (calculated)

5.466

GRAVY (calculated)

-0.413

Length

304 amino acids

Sequence
(BLAST)

001: MESLVLASSC SPSPRLPLLS PSARFRRLPG SMPQAPASTS GATRKGLRRH MLFVAAATAT PSGSRNVFKE LRAKGFASMS SSTANENMST ETGTLPPMPP
101: PSSYIGSPVF WIGVGVALSV AFTTVSSMLK KYAMEQAFKS MMTQAPPNSF GSNSPFPFGM PPQASPTAPS SFSYLEPRKG TSPQVSTVDV SATEVDAAGT
201: SKEVDVTETP KPSKNFAFVD VSPEDLQQKD LQSSLEMVDV KHDSTESESK EDTEEKAPRN GATFKLNEDA ARGPTESSQS GPMLSVETIE KMMEDPAVQK
301: MVYP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.