CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98060
KRH30716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	KRG98060	AT5G16620.1	15829604
AT1G06950.1	KRH30716	AT5G16620.1	15829604
AT1G06950.1	KRG98060	AT5G16620.1	17535810
AT1G06950.1	KRH30716	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72787	Soybean	endoplasmic reticulum	95.68	95.78
KRG98182	Soybean	plastid	77.01	77.47
VIT_06s0004g07730.t01	Wine grape	plastid	76.2	75.37
KRH30145	Soybean	cytosol	9.24	72.44
Solyc09g031780.2.1	Tomato	plastid	69.68	69.05
Bra015538.1-P	Field mustard	plastid	69.48	68.99
CDY54889	Canola	plastid	69.38	68.89
CDY10236	Canola	plastid	69.38	68.76
CDY15593	Canola	plastid	69.88	68.71
CDX86508	Canola	plastid	69.78	68.61
Bra030666.1-P	Field mustard	plastid	69.68	68.51
AT1G06950.1	Thale cress	plastid	69.78	68.41
GSMUA_Achr11P...	Banana	plastid	66.97	65.52
CDY06840	Canola	cytosol, mitochondrion	6.02	63.16
Os10t0492000-01	Rice	plastid	35.14	59.02
HORVU5Hr1G048520.1	Barley	cytosol	2.71	56.25
TraesCS1D01G174900.1	Wheat	plastid	57.23	55.5
TraesCS1B01G182500.1	Wheat	plastid	56.93	55.16
TraesCS1A01G165800.1	Wheat	golgi	56.83	55.11
OQU91582	Sorghum	plastid	55.02	53.83
Zm00001d032615_P002	Maize	mitochondrion	54.22	53.31
HORVU1Hr1G043940.3	Barley	plastid	56.83	52.6
TraesCS1D01G175000.1	Wheat	plastid	22.19	49.55
HORVU1Hr1G043900.4	Barley	plastid	22.19	49.44
CDX94311	Canola	cytosol	20.28	49.27
TraesCS1B01G182400.1	Wheat	plastid	21.89	48.88
TraesCS1A01G165700.1	Wheat	plastid	21.79	48.65
Os10t0492300-01	Rice	plastid	20.38	47.54
Zm00001d004430_P001	Maize	cytosol	4.02	41.67
Os10t0492101-00	Rice	plastid	5.82	33.14

Protein Annotations

EMBL:ACUP02009056	EnsemblPlants:KRH17141	EnsemblPlantsGene:GLYMA_14G201500	EntrezGene:100810630	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021
InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940	ProteinID:KRH17141	ProteinID:KRH17141.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000233B40E	UniProt:I1MBI6	MapMan:23.1.3.2	:	:

Description

hypothetical protein

Coordinates

chr14:+:46688725..46696028

Molecular Weight (calculated)

109873.0 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.309

Length

996 amino acids

Sequence
(BLAST)

001: MNPSTLTPSH THRPLLLPSP FYSRRRRFRV SLPRCSSDAA AAAAPSPPPP TPPQRPPKDL KGIELLVDKL SPPARLATSA VIVAGAAAAG YGLGSRFGGS
101: RYAALGGAVA LGAAGGAAAY ALNAAAPQVA AVNLHNYVAA FDDPSKLKKE EIEAIASKYG VSKQDEAFKA EICDIYSEFV SSVLPPGGEE LKGDEVDRIV
201: SFKNSLGIDD PDAASMHMEI GRKIFRQRLE VGDRDADVEQ RRAFQKLIYV SNLVFGDASS FLLPWKRVFK VTDSQIEVAV RDNAQRLFAS KLKSVGRDID
301: AEQLVALRKE QQLCRLSDEL AENLFRTHTR KLVEENISVA IGILKSRTKA VPGVSQAVAE LDRVLAFNNL LISFKTHPDV DRFARGVGPV SLVGGEYDGD
401: RKIEDLKLLY RAYVSDALSG GRMEDDKLAA LNQLRNIFGL GKREAEAISL DVTSKVYRKR LAQAVADGEL EMADSKAAFL QNLCDELHFD PQKASELHEE
501: IYRQKLQKCV ADGELNEEDV AALLRLRVML CIPQQIVETA HSDICGSLFE KVVKEAIASG VDGYDAEIQK SVRKAAHGLR LTREVAISIA SKAVRKIFIN
601: YIKRARAAGN RTESAKELKK MIAFNTLVVT NLVEDIKGES ADISTEEPVK EDITQTDDEE WESLQTLKKI RPNKELTEKL GKPGQTEITL KDDLPERDRT
701: DLYKTYLLYC LTGEVTRVPF GAQITTKKDD SEYLLLNQLG GILGLSSQEI VEVHRGLAEQ AFRQQAEVIL ADGQLTKARV EQLNNLQKQV GLPQEYAQKI
801: IKSITTTKMA AAIETAVTQG RLNMKQIREL KEANVDLDSM VSENLRETLF KKTVDDIFSS GTGEFDNEEV YEKIPSDLNI NKEKARGVVH ELAKSRLSNS
901: LVQAVSLLRQ RNHKGVVSSL NDLLACDKAV PSQPVSWEVP EELADLYTIY LKSDPTPENL SRLQYLLGIN DSTAAALREM GDRLLNTTAE EEKFVF

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.