CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98060
KRH30716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	KRG98060	AT5G16620.1	15829604
AT1G06950.1	KRH30716	AT5G16620.1	15829604
AT1G06950.1	KRG98060	AT5G16620.1	17535810
AT1G06950.1	KRH30716	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17141	Soybean	endoplasmic reticulum	95.78	95.68
KRG98182	Soybean	plastid	75.78	76.16
VIT_06s0004g07730.t01	Wine grape	plastid	76.18	75.27
KRH30145	Soybean	cytosol	9.45	74.02
Solyc09g031780.2.1	Tomato	plastid	69.35	68.66
Bra015538.1-P	Field mustard	plastid	68.84	68.3
CDY54889	Canola	plastid	68.74	68.2
CDY10236	Canola	plastid	68.84	68.16
CDY15593	Canola	plastid	69.15	67.92
CDX86508	Canola	plastid	69.05	67.82
Bra030666.1-P	Field mustard	plastid	69.05	67.82
AT1G06950.1	Thale cress	plastid	69.15	67.72
GSMUA_Achr11P...	Banana	plastid	66.13	64.64
CDY06840	Canola	cytosol, mitochondrion	6.03	63.16
HORVU5Hr1G048520.1	Barley	cytosol	3.02	62.5
Os10t0492000-01	Rice	plastid	35.68	59.87
TraesCS1D01G174900.1	Wheat	plastid	57.79	55.99
TraesCS1B01G182500.1	Wheat	plastid	57.49	55.64
TraesCS1A01G165800.1	Wheat	golgi	57.39	55.6
OQU91582	Sorghum	plastid	54.87	53.63
HORVU1Hr1G043940.3	Barley	plastid	57.29	52.97
Zm00001d032615_P002	Maize	mitochondrion	53.87	52.91
TraesCS1D01G175000.1	Wheat	plastid	22.21	49.55
CDX94311	Canola	cytosol	20.4	49.51
HORVU1Hr1G043900.4	Barley	plastid	22.11	49.22
TraesCS1B01G182400.1	Wheat	plastid	21.91	48.88
TraesCS1A01G165700.1	Wheat	plastid	21.81	48.65
Os10t0492300-01	Rice	plastid	20.4	47.54
Zm00001d004430_P001	Maize	cytosol	4.12	42.71
Os10t0492101-00	Rice	plastid	5.83	33.14

Protein Annotations

EMBL:ACUP02001242	EnsemblPlants:KRH72787	EnsemblPlantsGene:GLYMA_02G233700	EntrezGene:100810328	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021
InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940	ProteinID:KRH72787	ProteinID:KRH72787.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000233795A	UniProt:I1JHJ8	MapMan:23.1.3.2	:	:

Description

hypothetical protein

Coordinates

chr2:+:42114851..42122130

Molecular Weight (calculated)

109955.0 Da

IEP (calculated)

6.224

GRAVY (calculated)

-0.351

Length

995 amino acids

Sequence
(BLAST)

001: MNPSTLTPSH THRPLLLPSP FHTRRRRFKV SLPRCSSSSA ASSPPPPPPP PPQRPPKDLK GIDVLVDKLS PPARLATSAV IVAGAAAAGY GLGSRFGGSR
101: YAALGGAVAL GAAGGAAAYA LNAAAPQVAA VNLHNYVAAF DDPSKLKKEE IEAIASKYGV SKQDEAFKTE ICHIYSEFVS SVLPPGGEEL KGDEVDRIVS
201: FKNSLGIDDP DAAAMHMEIG RKFFRQRLEV GDRDADVEQR RAFQKLIYVS NLVFGDASSF LLPWKRVFKV TDSQIEVAVR DNAQRLFASK LKSVGRDIDA
301: EKLVALRKEQ QLCRLSDELA ENLFRDHTRK LVEENISEAN RILKSRTKAV PGATQAIAEL DKVLAFNNLL ISFKNHPDVD RFARGVGPIS LVGGEYDGDR
401: KIEDLKLLYR AYVSDALSGG RMEDDKLAAL NQLRNIFGLG KREAEAISLD VTSKVYRKRL AQAAADGELE MADSKAAFLQ NLCDELHFDP QKASELHEEI
501: YRQKLQRCVA DGELNEEDVA ALLRMRVMLC IPQQIVEAAH SDICGSLFEK VVKEAIASGV DGYDAEIQKS VRKAAHGLRL TREVAMSIAS KAVRKIFINY
601: IKRARAAGNR TESAKELKKM IAFNTLVVTN LVEDIKGEST DISSEEPVKE DITQTDDEEW ESLQTLKKIR PNKELTEKLG KPGQTEITLK DDLPERDRTD
701: LYKTYLLYCL TGEVTRVPFG AQITTKKDDS EYLLLNQLGG ILGLSSQEIV EVHRGLAEQA FRQQAEVILA DGQLTKARVE QLNNLQKQVG LPQEYAQKII
801: KSITTTKMAA AIETAVTQGR LNMKQIRELK EADVDLDSMV SENLRETLFK KTVDDIFSSG TGEFDTEEVY EKIPSDLNIN KEKARGVVHE LAKGRLSNSL
901: IQAVSLLRQR NQQGVVSSLN DLLACDKAVP SQPVSWEVPE ELSDLYTIYL KSNPTPENLS RLQYLLGIND STAAALREIG DRLLNTTAEE EKFVF

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.