CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70550	Canola	cytosol	94.44	36.04
CDX78660	Canola	cytosol	94.44	15.38
CDX70641	Canola	cytosol	83.33	11.22
HORVU1Hr1G053280.1	Barley	mitochondrion	50.93	7.89
CDY66172	Canola	cytosol	69.44	7.61
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	72.22	7.34
CDY43117	Canola	cytosol	70.37	6.88
CDX92087	Canola	cytosol	71.3	6.51
AT2G16640.3	Thale cress	cytosol	69.44	6.22
CDX97270	Canola	cytosol	25.0	6.15
PGSC0003DMT400024781	Potato	cytosol	55.56	5.67
EER91974	Sorghum	cytosol	51.85	5.66
Os10t0548800-01	Rice	cytosol, plasma membrane, plastid	52.78	5.65
Zm00001d029846_P001	Maize	plastid	51.85	5.62
Zm00001d047130_P001	Maize	cytosol	51.85	5.47
KRH24252	Soybean	mitochondrion	60.19	5.37
TraesCS1B01G222000.1	Wheat	cytosol	51.85	5.21
TraesCS1D01G211300.1	Wheat	cytosol, golgi	50.93	5.12
VIT_03s0038g02070.t01	Wine grape	nucleus	60.19	5.1
TraesCS1A01G208000.1	Wheat	cytosol	50.0	5.06
Solyc01g111240.2.1	Tomato	nucleus	59.26	4.77
KRH29257	Soybean	endoplasmic reticulum	60.19	4.75
PGSC0003DMT400004034	Potato	cytosol	59.26	4.68
GSMUA_Achr8P19440_001	Banana	cytosol	47.22	4.25
GSMUA_Achr11P...	Banana	cytosol	43.52	3.33
CDY35813	Canola	cytosol	22.22	3.07
CDX92471	Canola	cytosol	22.22	3.07
CDX98809	Canola	cytosol	10.19	2.44
CDY50376	Canola	cytosol	13.89	2.15
CDX70178	Canola	cytosol	11.11	1.58
CDX70658	Canola	cytosol	1.85	1.56
CDX91288	Canola	cytosol	10.19	1.4
CDY44175	Canola	cytosol	8.33	0.97
CDY22896	Canola	cytosol	8.33	0.89
CDX70657	Canola	cytosol	0.93	0.34
CDY55323	Canola	cytosol	0.93	0.34
CDY32453	Canola	cytosol	0.93	0.34
CDY15228	Canola	cytosol	0.93	0.34
CDX89987	Canola	cytosol	0.93	0.34
CDY52130	Canola	cytosol, plastid	0.93	0.32
CDX80936	Canola	cytosol	0.93	0.32
CDX98810	Canola	cytosol	0.93	0.32
CDX70551	Canola	cytosol	0.93	0.28
Solyc11g043010.1.1	Tomato	nucleus	0.0	0.0
CDX97269	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70659	EnsemblPlantsGene:GSBRNA2T00140514001	InterPro:TOC159_MAD	PANTHER:PTHR10903	PANTHER:PTHR10903:SF47	PFAM:PF11886
ProteinID:CDX70659	ProteinID:CDX70659.1	SEG:seg	UniParc:UPI0004EE2980	MapMan:35.1	:

Description

BnaC03g07430D

Coordinates

chrLK031791:+:1425735..1426061

Molecular Weight (calculated)

11278.6 Da

IEP (calculated)

7.578

GRAVY (calculated)

0.323

Length

108 amino acids

Sequence
(BLAST)

001: MDVCGGGAMT CRGDAAYGGS LEAHLLGSFF LSTLGLSVVD GHGSLAIGGN IQTQVHIGRS SDLTARANLN SRGAVQVSIR ANIFELLEHA MAVLVPLFKK
101: LLSYYSPN

Best Arabidopsis Sequence Match ( AT3G16620.1 )
(BLAST)

0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH

Arabidopsis Description

TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.