CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002291.1-P	Field mustard	cytosol	98.98	98.98
CDY35813	Canola	cytosol	96.55	96.55
AT5G20300.4	Thale cress	cytosol	83.01	81.97
VIT_11s0118g00260.t01	Wine grape	cytosol, mitochondrion, plastid	55.04	54.01
Solyc07g007650.1.1	Tomato	cytosol	37.04	53.41
KRH20190	Soybean	cytosol	51.6	50.82
KRH03616	Soybean	mitochondrion	51.6	50.75
PGSC0003DMT400078922	Potato	endoplasmic reticulum	53.64	50.18
GSMUA_Achr1P09910_001	Banana	mitochondrion	45.47	46.97
CDX97269	Canola	cytosol	3.83	45.45
Os12t0197400-01	Rice	mitochondrion	44.96	44.73
EES15811	Sorghum	mitochondrion	44.7	44.53
Zm00001d035254_P001	Maize	plastid	44.19	44.13
TraesCS5D01G120200.1	Wheat	mitochondrion	43.68	43.57
TraesCS5A01G112900.1	Wheat	mitochondrion	43.55	43.49
HORVU5Hr1G031380.1	Barley	mitochondrion	43.81	43.47
TraesCS5B01G109100.1	Wheat	mitochondrion	43.55	43.38
CDX70657	Canola	cytosol	13.54	36.55
CDY50376	Canola	cytosol	30.91	34.72
CDX97270	Canola	cytosol	19.28	34.4
CDX91288	Canola	cytosol	31.29	31.17
CDX78660	Canola	cytosol	25.29	29.86
CDX70551	Canola	cytosol	13.54	29.44
CDY66172	Canola	cytosol	35.76	28.4
CDY52130	Canola	cytosol, plastid	10.98	27.48
CDX98810	Canola	cytosol	10.86	27.16
CDX80936	Canola	cytosol	10.86	27.16
CDX70641	Canola	cytosol	26.69	26.06
CDY43117	Canola	cytosol	36.14	25.63
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	34.48	25.4
CDY32453	Canola	cytosol	9.58	25.25
CDX89987	Canola	cytosol	9.58	25.17
CDY15228	Canola	cytosol	9.58	25.17
CDX70658	Canola	cytosol	4.09	25.0
CDY55323	Canola	cytosol	9.45	24.92
CDX92087	Canola	cytosol	36.4	24.11
CDX70550	Canola	cytosol	8.05	22.26
CDX70659	Canola	cytosol	3.07	22.22
CDX70178	Canola	cytosol	12.64	13.04
CDY44175	Canola	cytosol	11.37	9.63
CDY22896	Canola	cytosol	12.13	9.38
CDX98809	Canola	cytosol	2.04	3.56

Protein Annotations

MapMan:23.1.2.2	Gene3D:3.40.50.300	GO:A0A078DT69	EnsemblPlants:CDX92471	ProteinID:CDX92471	ProteinID:CDX92471.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00154243001
InterPro:G_AIG1	InterPro:IPR006703	InterPro:P-loop_NTPase	PFAM:PF04548	PFAM:PF11886	PFscan:PS51720
PANTHER:PTHR10903	PANTHER:PTHR10903:SF68	SUPFAM:SSF52540	InterPro:TOC159_MAD	UniParc:UPI0004EE5130	SEG:seg

Description

BnaA10g15100D

Coordinates

chrLK031872:+:826536..829310

Molecular Weight (calculated)

87577.9 Da

IEP (calculated)

7.120

GRAVY (calculated)

-0.491

Length

783 amino acids

Sequence
(BLAST)

001: MKGFIDWVFD LSNSMASSSR PLLGTAPFSR HHEPHDSHSQ APALPEPVAR SEPPCSTSGD VETHPPVSQQ QTPLESLHQS SLDLNDKKHN PLAKIGDLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKT VKLKQDKAKA VAKEQESSGV PELDFSLRIL VLGKTGVGKS ATINSILGQS KSGTDAFQPA
201: TDRIEEVNGT VSGVKVTFID TPGLHQPSPS SARKNRKTLL SIKRYVKKRP PDVVLYLDRL DTIDLRYSDY PLLSLITEVL GAALWLNTIL VMTHSSVASE
301: GRNMNYESYV GQRVDVVQHY IHQAVSDTKL ENPVLLVENH PSCRKNHAGE CVLPNGLVWK PQFMFLCVCT KVLGDVQSLL RFRDSIGLGQ ASGTRTASLP
401: HLLSVFLRRR LSSGGDEAER EIDELMDSEL EEEEEDEYDQ LPAIRILGKA RFEKLSKSQK REYLDELDYR ETLYLKKQLK EECRRRKDEK LNEEEEEKSD
501: QAAVPLPEMA GPDSFDSDFP SHRYRSIATS DQWLVRPVYD PQGWDHDVGF DGINIETAVK VKKNLFASAN GQVSRDKQRF TIHSETNAAY TTDSRIQTFS
601: VAADVQSSGD DLVYTFHGGT KLKTFKHNTT DLGVGLTSFG GKYYLAGKIE DSLLVGKRVK LTVNAGQMKG SGETAHGGSF EACIRGRDYP VRNEQIGVTV
701: TALSFKKELV LNWGLQTQVR PTRDTNVDVS VNMNNRKMGK INVKLNSSEH WEIALISAFT LFKALVRRKK AVSEITNENE EEL

Best Arabidopsis Sequence Match ( AT5G20300.2 )
(BLAST)

001: MKGFKDWVFA LSNSMASSRP LLGSDPFFRD PHQEQDNHSQ APAAPQPVTL SEPPCSTSSD LEILPPLSQQ QVPLESLYQS SIDLNGKKHN PLAKIGGLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS

Arabidopsis Description

TOC90Translocase of chloroplast 90, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6S5G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.