CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52130	Canola	cytosol, plastid	93.93	93.93
CDX80936	Canola	cytosol	93.29	93.29
GSMUA_Achr1P22210_001	Banana	cytosol	30.03	67.63
GSMUA_AchrUn_...	Banana	cytosol	66.13	66.35
CDY55323	Canola	cytosol	60.06	63.3
CDX89987	Canola	cytosol	60.06	63.09
CDY32453	Canola	cytosol	59.42	62.63
CDY15228	Canola	cytosol	59.42	62.42
KXG39799	Sorghum	cytosol	62.3	59.82
TraesCS4D01G230000.1	Wheat	cytosol	61.98	59.51
TraesCS4B01G228900.1	Wheat	cytosol	61.66	59.2
TraesCS4A01G072800.1	Wheat	golgi, plastid	61.66	59.2
Os03t0240500-01	Rice	plastid	61.34	58.72
Zm00001d028373_P002	Maize	cytosol	61.34	57.48
Zm00001d047965_P002	Maize	cytosol	61.66	54.52
HORVU4Hr1G064110.2	Barley	cytosol	61.02	53.65
CDX70178	Canola	cytosol	97.76	40.32
CDX97269	Canola	cytosol	7.67	36.36
CDX70657	Canola	cytosol	20.77	22.41
CDX70551	Canola	cytosol	20.13	17.5
CDY50376	Canola	cytosol	26.84	12.05
CDX78660	Canola	cytosol	24.6	11.61
CDX92471	Canola	cytosol	27.16	10.86
CDY35813	Canola	cytosol	26.2	10.47
CDX91288	Canola	cytosol	26.2	10.43
CDX70658	Canola	cytosol	3.83	9.38
CDX70641	Canola	cytosol	23.64	9.23
CDY66172	Canola	cytosol	28.75	9.13
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	28.11	8.28
CDY43117	Canola	cytosol	28.75	8.15
CDX92087	Canola	cytosol	28.43	7.53
CDX97270	Canola	cytosol	8.31	5.92
CDY44175	Canola	cytosol	15.34	5.19
CDY22896	Canola	cytosol	15.34	4.74
CDX70550	Canola	cytosol	2.56	2.83
CDX70659	Canola	cytosol	0.32	0.93
CDX98809	Canola	cytosol	0.96	0.67

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	GO:A0A078E9P3	EnsemblPlants:CDX98810	ProteinID:CDX98810	ProteinID:CDX98810.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009536	GO:GO:0009707	GO:GO:0015450	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00106908001	InterPro:G_AIG1
InterPro:IPR006703	InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903
PANTHER:PTHR10903:SF43	SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0004EE05A0	SEG:seg

Description

BnaC09g50250D

Coordinates

chrLK031907:-:90641..92722

Molecular Weight (calculated)

34682.0 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.182

Length

313 amino acids

Sequence
(BLAST)

001: MAALQMSREW IGIQQFPPAT QSKLLEILGK FKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPSLVS RSRSGFTLNI IDTPGLIEGG
101: YVNDQAVNLI KRFLLNMTID VLLYVDRLDV YRVDDLDKQV VTAITDAFGK EIWKKSALVL SHAQFSPPDG LNYDLFVSRR SDALLKLIRA SAQLKKQDMQ
201: DSSIPVILVE NSGRCHKNES DEKILPDGSS WIPNLYKSIT EISFNGNKSI HVDKKLVEGP NPNARGKRLI PLIFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WEMRESGSAS RRS

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.