CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97269	Canola	cytosol	6.89	72.73
CDX91288	Canola	cytosol	63.41	56.23
CDX97270	Canola	cytosol	35.01	55.58
KRH30746	Soybean	cytosol	9.76	51.91
PGSC0003DMT400029640	Potato	cytosol	72.02	50.5
CDX70657	Canola	cytosol	18.79	45.17
Bra036261.1-P	Field mustard	nucleus	99.57	44.66
AT4G02510.4	Thale cress	nucleus	92.11	42.71
GSMUA_Achr9P31010_001	Banana	cytosol	57.39	40.44
KRH43000	Soybean	nucleus	67.72	39.83
KRH59116	Soybean	nucleus	69.3	38.95
GSMUA_Achr9P31000_001	Banana	cytosol	58.54	37.36
Zm00001d010852_P002	Maize	plastid	64.28	37.12
CDX70551	Canola	cytosol	19.08	36.94
Solyc09g074940.1.1	Tomato	plastid	71.74	35.64
OQU90674	Sorghum	nucleus	47.35	35.64
Os05t0151400-01	Rice	plastid	64.71	34.53
Zm00001d035812_P003	Maize	plastid	64.13	34.36
VIT_07s0005g00180.t01	Wine grape	plastid	71.45	33.99
OQU77419	Sorghum	nucleus	64.71	33.78
CDX78660	Canola	cytosol	31.28	32.88
CDY66172	Canola	cytosol	46.34	32.76
TraesCS1A01G093900.3	Wheat	cytosol, nucleus, plastid	64.99	31.81
TraesCS1D01G102500.3	Wheat	cytosol, nucleus, plastid	64.85	31.72
HORVU1Hr1G021840.9	Barley	nucleus	64.85	31.7
TraesCS1B01G122000.4	Wheat	cytosol, nucleus, plastid	64.85	31.5
GSMUA_Achr6P20360_001	Banana	cytosol	50.22	30.95
CDX92471	Canola	cytosol	34.72	30.91
CDY35813	Canola	cytosol	34.58	30.78
CDX70641	Canola	cytosol	33.43	29.05
CDY43117	Canola	cytosol	45.91	28.99
CDX70658	Canola	cytosol	5.31	28.91
HORVU5Hr1G117690.19	Barley	plastid	47.49	28.34
Zm00001d012893_P002	Maize	cytosol, plastid	45.91	28.12
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	42.61	27.94
TraesCS4A01G358400.1	Wheat	plastid	47.2	27.6
Zm00001d034755_P001	Maize	cytosol	45.48	27.47
Os03t0835100-00	Rice	cytosol, plastid	47.49	27.45
CDX80936	Canola	cytosol	12.2	27.16
CDY52130	Canola	cytosol, plastid	12.2	27.16
TraesCS5D01G514500.1	Wheat	cytosol, plastid	47.06	27.13
CDX92087	Canola	cytosol	45.91	27.07
TraesCS5B01G514000.1	Wheat	cytosol	47.06	26.91
CDX89987	Canola	cytosol	11.48	26.85
CDX98810	Canola	cytosol	12.05	26.84
CDY55323	Canola	cytosol	11.33	26.6
CDY32453	Canola	cytosol	11.19	26.26
CDY15228	Canola	cytosol	11.19	26.17
CDX70550	Canola	cytosol	10.19	25.09
CDX70659	Canola	cytosol	2.15	13.89
CDX70178	Canola	cytosol	13.92	12.78
CDY44175	Canola	cytosol	15.64	11.8
CDY22896	Canola	cytosol	16.36	11.25
Os01t0356800-00	Rice	plastid	31.99	4.17
CDX98809	Canola	cytosol	2.15	3.33

Protein Annotations

MapMan:23.1.2.2	Gene3D:3.40.50.300	GO:A0A078IK53	UniProt:A0A078IK53	EnsemblPlants:CDY50376	ProteinID:CDY50376
ProteinID:CDY50376.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0004871	GO:GO:0004888
GO:GO:0004930	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0038023	GO:GO:0043024	GO:GO:0045036	GO:GO:0045037	GO:GO:0051087
GO:GO:0061927	EnsemblPlantsGene:GSBRNA2T00096595001	InterPro:G_AIG1	InterPro:IPR006703	InterPro:P-loop_NTPase	PFAM:PF04548
PFAM:PF11886	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF39	SUPFAM:SSF52540	InterPro:TOC159_MAD
UniParc:UPI0004EF159E	SEG:seg	:	:	:	:

Description

BnaCnng19080DBnaCnng19080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK53]

Coordinates

chrLK032905:-:4755..7433

Molecular Weight (calculated)

76440.1 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.439

Length

697 amino acids

Sequence
(BLAST)

001: MSDRIDGQIV TDSEEDVDTE DEGEEKMFDS EALAALLKAA TGGGSSEGGN FTITSQDGTK LFSMDRPAGL SSSLRPLKPA AAPRAIRPNI FSNPNVTVDE
101: SEINLSEEEK QKLEKLQSLR VKFLRLLQRL GQQTGQLFSL DAAKKKAVEY EAEGNEELNF SLNILVLGKA GVGKSATINS ILGNQKASTD AFGLSTNSVR
201: EISETVGGIK ITFIDTPGLK PAAMDQSANS KMLASVKKVM KRCPPDIVLY VDRLDTQNRD LNNLPLLKTV TASLGASIWK NAIVTLTHAA SAPPDGPSGA
301: PLSYDVFVAQ CSHIVQQSIG QAVGDLRLMN PSLMNPVSLV ENHPLCRKNR EGVKVLPNGQ TWRPQLLLLC YSLKSRAHPK LPTHQGGDSV DSDIEIDDVS
401: DSEQEDGDED EYDQLPPFKP LRKTQLAKLS KEQRKAYLEE YDYRVKLLQK KQWREELKRM REMKKNGKKV GENEFVPLPD MVLPPSFDSD NSAYRYRFLE
501: PTSQLLTRPV LDTHGWDHDC GYDGVNAEYS LAIASRFPAT ATVQTTKDKK EFNIHLDSSV SAKNGDSGST MAGFDIQNVG KQLAYVVRGE TKFKNLKKNK
601: TTLGGSVTFL GENIATGVKL EDQIALGKRF VLVGISVGRN SKIALRAGLN NKMSGQITVR TSSSDQLQIA LTAILPIAMS IYKMLRPDGA SDKYSMY

Best Arabidopsis Sequence Match ( AT4G02510.2 )
(BLAST)

0001: MDSKSVTPEP TNPFYASSGQ SGKTYASVVA AAAAAAADKE DGGAVSSAKE LDSSSEAVSG NSDKVGADDL SDSEKEKPNL VGDGKVSDEV DGSLKEDSTT
0101: PEATPKPEVV SGETIGVDDV SSLSPKPEAV SDGVGVVEEN KKVKEDVEDI KDDGESKIEN GSVDVDVKQA STDGESESKV KDVEEEDVGT KKDDEGESEL
0201: GGKVDVDDKS DNVIEEEGVE LTDKGDVIVN SSPVESVHVD VAKPGVVVVG DAEGSEELKI NADAETLEVA NKFDQIGDDD SGEFEPVSDK AIEEVEEKFT
0301: SESDSIADSS KLESVDTSAV EPEVVAAESG SEPKDVEKAN GLEKGMTYAE VIKAASAVAD NGTKEEESVL GGIVDDAEEG VKLNNKGDFV VDSSAIEAVN
0401: VDVAKPGVVV VGDVEVSEVL ETDGNIPDVH NKFDPIGQGE GGEVELESDK ATEEGGGKLV SEGDSMVDSS VVDSVDADIN VAEPGVVVVG AAKEAVIKED
0501: DKDDEVDKTI SNIEEPDDLT AAYDGNFELA VKEISEAAKV EPDEPKVGVE VEELPVSESL KVGSVDAEED SIPAAESQFE VRKVVEGDSA EEDENKLPVE
0601: DIVSSREFSF GGKEVDQEPS GEGVTRVDGS ESEEETEEMI FGSSEAAKQF LAELEKASSG IEAHSDEANI SNNMSDRIDG QIVTDSDEDV DTEDEGEEKM
0701: FDTAALAALL KAATGGGSSE GGNFTITSQD GTKLFSMDRP AGLSSSLRPL KPAAAPRANR SNIFSNSNVT MADETEINLS EEEKQKLEKL QSLRVKFLRL
0801: LQRLGHSAED SIAAQVLYRL ALLAGRQAGQ LFSLDAAKKK AVESEAEGNE ELIFSLNILV LGKAGVGKSA TINSILGNQI ASIDAFGLST TSVREISGTV
0901: NGVKITFIDT PGLKSAAMDQ STNAKMLSSV KKVMKKCPPD IVLYVDRLDT QTRDLNNLPL LRTITASLGT SIWKNAIVTL THAASAPPDG PSGTPLSYDV
1001: FVAQCSHIVQ QSIGQAVGDL RLMNPSLMNP VSLVENHPLC RKNREGVKVL PNGQTWRSQL LLLCYSLKVL SETNSLLRPQ EPLDHRKVFG FRVRSPPLPY
1101: LLSWLLQSRA HPKLPGDQGG DSVDSDIEID DVSDSEQEDG EDDEYDQLPP FKPLRKTQLA KLSNEQRKAY FEEYDYRVKL LQKKQWREEL KRMKEMKKNG
1201: KKLGESEFGY PGEEDDPENG APAAVPVPLP DMVLPPSFDS DNSAYRYRYL EPTSQLLTRP VLDTHGWDHD CGYDGVNAEH SLALASRFPA TATVQVTKDK
1301: KEFNIHLDSS VSAKHGENGS TMAGFDIQNV GKQLAYVVRG ETKFKNLRKN KTTVGGSVTF LGENIATGVK LEDQIALGKR LVLVGSTGTM RSQGDSAYGA
1401: NLEVRLREAD FPIGQDQSSF GLSLVKWRGD LALGANLQSQ VSVGRNSKIA LRAGLNNKMS GQITVRTSSS DQLQIALTAI LPIAMSIYKS IRPEATNDKY
1501: SMY

Arabidopsis Description

TOC159Translocase of chloroplast 159, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.