Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029640 | Potato | cytosol | 69.49 | 98.09 |
| KRH30746 | Soybean | cytosol | 6.7 | 71.76 |
| CDY50376 | Canola | cytosol | 35.64 | 71.74 |
| CDX97269 | Canola | cytosol | 3.28 | 69.7 |
| CDX97270 | Canola | cytosol | 18.32 | 58.54 |
| CDX91288 | Canola | cytosol | 31.22 | 55.73 |
| KRH43000 | Soybean | nucleus | 46.4 | 54.94 |
| KRH59116 | Soybean | nucleus | 48.47 | 54.84 |
| Bra018546.1-P | Field mustard | mitochondrion | 34.0 | 53.48 |
| GSMUA_Achr9P31010_001 | Banana | cytosol | 37.13 | 52.68 |
| VIT_07s0005g00180.t01 | Wine grape | plastid | 52.67 | 50.44 |
| GSMUA_Achr9P31000_001 | Banana | cytosol | 36.99 | 47.53 |
| Zm00001d010852_P002 | Maize | plastid | 40.41 | 46.98 |
| AT4G02510.4 | Thale cress | nucleus | 49.82 | 46.51 |
| Solyc01g080780.2.1 | Tomato | nucleus | 36.07 | 45.92 |
| Bra036261.1-P | Field mustard | nucleus | 49.82 | 44.98 |
| Zm00001d035812_P003 | Maize | plastid | 41.05 | 44.27 |
| Os05t0151400-01 | Rice | plastid | 40.98 | 44.03 |
| OQU77419 | Sorghum | nucleus | 41.27 | 43.37 |
| OQU90674 | Sorghum | nucleus | 27.87 | 42.22 |
| HORVU1Hr1G021840.9 | Barley | nucleus | 42.05 | 41.37 |
| TraesCS1A01G093900.3 | Wheat | cytosol, nucleus, plastid | 41.91 | 41.29 |
| TraesCS1D01G102500.3 | Wheat | cytosol, nucleus, plastid | 41.7 | 41.05 |
| TraesCS1B01G122000.4 | Wheat | cytosol, nucleus, plastid | 41.84 | 40.91 |
| Solyc07g007650.1.1 | Tomato | cytosol | 14.61 | 37.75 |
| GSMUA_Achr6P20360_001 | Banana | cytosol | 30.22 | 37.49 |
| Solyc11g043010.1.1 | Tomato | nucleus | 19.03 | 36.68 |
| TraesCS4A01G358400.1 | Wheat | plastid | 30.01 | 35.32 |
| HORVU5Hr1G117690.19 | Barley | plastid | 29.29 | 35.19 |
| Os03t0835100-00 | Rice | cytosol, plastid | 30.15 | 35.07 |
| Zm00001d034755_P001 | Maize | cytosol | 28.8 | 35.01 |
| Zm00001d012893_P002 | Maize | cytosol, plastid | 28.37 | 34.97 |
| TraesCS5D01G514500.1 | Wheat | cytosol, plastid | 29.86 | 34.66 |
| TraesCS5B01G514000.1 | Wheat | cytosol | 30.01 | 34.54 |
| Solyc05g052160.2.1 | Tomato | plastid | 6.56 | 30.56 |
| Solyc03g095220.2.1 | Tomato | plastid | 5.63 | 30.5 |
| Solyc01g111240.2.1 | Tomato | nucleus | 29.08 | 30.43 |
| Os01t0356800-00 | Rice | plastid | 22.81 | 5.99 |
Protein Annotations
| MapMan:23.1.2.2 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004871 | GO:GO:0004888 | GO:GO:0004930 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007186 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009707 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016817 |
| GO:GO:0038023 | GO:GO:0043024 | GO:GO:0045036 | GO:GO:0045037 | GO:GO:0051087 | GO:GO:0061927 |
| InterPro:G_AIG1 | InterPro:IPR006703 | UniProt:K4CV71 | InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 |
| PFscan:PS51720 | PANTHER:PTHR10903 | PANTHER:PTHR10903:SF39 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc09g074940.1 | EnsemblPlants:Solyc09g074940.1.1 |
| TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD | InterPro:Toc86_159 | UniParc:UPI000276B772 | SEG:seg | : |
Description
No Description!
Coordinates
chr9:-:66732163..66736374
Molecular Weight (calculated)
151064.0 Da
IEP (calculated)
4.241
GRAVY (calculated)
-0.513
Length
1403 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSEEATFSP PAVSSSPGSS PINNSSSNHT ETENVSKINV EINDSDINSN SNSEGKSASD VTIVGGQQEL PIPADPDEGT LEKTIGEEKL DDSVVGSAEI
0101: EKPVSEVSMS EGVENVEALG GDVGGSVPVI GNSLPDSTDS DATKSLGTGI EGSEGNTEEF DSVDKLNSIE QVKDNGGEVA VGAGLKEGED RSTQEEVKET
0201: VEDEKMEPKE GGDRSIEEEV KETVEDEKIE LQGGEDRSIQ EEVKEIVEDE KNEALTSVAS SNLKEAEEPT SVIEESAIAS SNLKESEEPT SVFEEVAIAS
0301: SNLKEAEEPT SVIEERAIHS DDAEKLNKVV VEQPSESLLA ETGSKKFTSE GDAVVDAIEV NVSGPGVAVV GDVDESKEVE EHIEGTHDEN VTSVNDVGET
0401: RQLIEEVAKM TVDEVDAQNP KPVVDDTVAT AESKPVDNIV GAGKLDSGVV QTGDVVAVTE EIKEADPETV NKSLDTKDVE VEPEQAVSGT IYANGDHSGE
0501: SVERDVVEVE VSGQTSAISR SITGSEQEGE AKDHIDEEAN LEGSVSDGET DGMIFGSSEA AKQFMEELER ESGGGSYAGA EVSQDIDGQI VTDSDEEADT
0601: DEEGDVKELF DSAALAALLK AATGGDSDGG NITVTSQDGS RLFSVERPAG LGSSLRSLRP APRPSQPNLF THSNLQNSGE SENNLSEEEK KKLDTLQQIR
0701: VKFLRLIHRL GLSSDEPIAA QVLYRMTLIA RRQNSPLFSV EAAKMKAFQL EAEGKDDLDF SVNILVIGKS GVGKSATINS IFGEEKTSID AFGPATTSVK
0801: EISGVVDGVK IRVFDTPGLK SSAMEQGFNR SVLSSVKKLT KKNPPDIYLY VDRLDAQTRD LNDLPMLKTI TSCLGPSIWR SAIVTLTHGA SAPPDGPSGS
0901: PLSYEVFVTQ RSHVVQQSIG QAVGDLRMMS PSLMNPVSLV ENHPSCRRNR DGHKILPNGQ SWRPQLLLLS YSMKILSEAS ALSKPEDPFD HRKLFGFRTR
1001: SPPLPYMLSS MLQSRAHPKL SAEQGGDNGD SDIDLDDLSD SDQEEEDEYD QLPPFKPLRK AQLAKLSKEQ RKAYFEEYDY RVKLLQKKQL REDLKRMKEM
1101: KSKGKEAAID NGYAEEEADA GAAAPVAVPL PDMALPPSFD SDNPAYRYRF LEPTSQFLAR PVLDTHGWDH DCGYDGVNVE QSLAIASRFP AAVTVQITKD
1201: KKDFSINLDS SIAAKHGENG STMAGFDIQS IGKQLAYIVR GETKFKSLKK NKTACGISVT FLGENMVTGL KVEDQIILGK QYVLVGSAGT VRSQSDTAYG
1301: ANFELQRREA DFPIGQVQST LSMSVIKWRG DLALGFNSMA QFAVGRNSKV AVRAGINNKL SGQVTVRTSS SDHLSLALTA IIPTAIGIYR KLWPDAGEKY
1401: SIY
0101: EKPVSEVSMS EGVENVEALG GDVGGSVPVI GNSLPDSTDS DATKSLGTGI EGSEGNTEEF DSVDKLNSIE QVKDNGGEVA VGAGLKEGED RSTQEEVKET
0201: VEDEKMEPKE GGDRSIEEEV KETVEDEKIE LQGGEDRSIQ EEVKEIVEDE KNEALTSVAS SNLKEAEEPT SVIEESAIAS SNLKESEEPT SVFEEVAIAS
0301: SNLKEAEEPT SVIEERAIHS DDAEKLNKVV VEQPSESLLA ETGSKKFTSE GDAVVDAIEV NVSGPGVAVV GDVDESKEVE EHIEGTHDEN VTSVNDVGET
0401: RQLIEEVAKM TVDEVDAQNP KPVVDDTVAT AESKPVDNIV GAGKLDSGVV QTGDVVAVTE EIKEADPETV NKSLDTKDVE VEPEQAVSGT IYANGDHSGE
0501: SVERDVVEVE VSGQTSAISR SITGSEQEGE AKDHIDEEAN LEGSVSDGET DGMIFGSSEA AKQFMEELER ESGGGSYAGA EVSQDIDGQI VTDSDEEADT
0601: DEEGDVKELF DSAALAALLK AATGGDSDGG NITVTSQDGS RLFSVERPAG LGSSLRSLRP APRPSQPNLF THSNLQNSGE SENNLSEEEK KKLDTLQQIR
0701: VKFLRLIHRL GLSSDEPIAA QVLYRMTLIA RRQNSPLFSV EAAKMKAFQL EAEGKDDLDF SVNILVIGKS GVGKSATINS IFGEEKTSID AFGPATTSVK
0801: EISGVVDGVK IRVFDTPGLK SSAMEQGFNR SVLSSVKKLT KKNPPDIYLY VDRLDAQTRD LNDLPMLKTI TSCLGPSIWR SAIVTLTHGA SAPPDGPSGS
0901: PLSYEVFVTQ RSHVVQQSIG QAVGDLRMMS PSLMNPVSLV ENHPSCRRNR DGHKILPNGQ SWRPQLLLLS YSMKILSEAS ALSKPEDPFD HRKLFGFRTR
1001: SPPLPYMLSS MLQSRAHPKL SAEQGGDNGD SDIDLDDLSD SDQEEEDEYD QLPPFKPLRK AQLAKLSKEQ RKAYFEEYDY RVKLLQKKQL REDLKRMKEM
1101: KSKGKEAAID NGYAEEEADA GAAAPVAVPL PDMALPPSFD SDNPAYRYRF LEPTSQFLAR PVLDTHGWDH DCGYDGVNVE QSLAIASRFP AAVTVQITKD
1201: KKDFSINLDS SIAAKHGENG STMAGFDIQS IGKQLAYIVR GETKFKSLKK NKTACGISVT FLGENMVTGL KVEDQIILGK QYVLVGSAGT VRSQSDTAYG
1301: ANFELQRREA DFPIGQVQST LSMSVIKWRG DLALGFNSMA QFAVGRNSKV AVRAGINNKL SGQVTVRTSS SDHLSLALTA IIPTAIGIYR KLWPDAGEKY
1401: SIY
0001: MDSKSVTPEP TNPFYASSGQ SGKTYASVVA AAAAAAADKE DGGAVSSAKE LDSSSEAVSG NSDKVGADDL SDSEKEKPNL VGDGKVSDEV DGSLKEDSTT
0101: PEATPKPEVV SGETIGVDDV SSLSPKPEAV SDGVGVVEEN KKVKEDVEDI KDDGESKIEN GSVDVDVKQA STDGESESKV KDVEEEDVGT KKDDEGESEL
0201: GGKVDVDDKS DNVIEEEGVE LTDKGDVIVN SSPVESVHVD VAKPGVVVVG DAEGSEELKI NADAETLEVA NKFDQIGDDD SGEFEPVSDK AIEEVEEKFT
0301: SESDSIADSS KLESVDTSAV EPEVVAAESG SEPKDVEKAN GLEKGMTYAE VIKAASAVAD NGTKEEESVL GGIVDDAEEG VKLNNKGDFV VDSSAIEAVN
0401: VDVAKPGVVV VGDVEVSEVL ETDGNIPDVH NKFDPIGQGE GGEVELESDK ATEEGGGKLV SEGDSMVDSS VVDSVDADIN VAEPGVVVVG AAKEAVIKED
0501: DKDDEVDKTI SNIEEPDDLT AAYDGNFELA VKEISEAAKV EPDEPKVGVE VEELPVSESL KVGSVDAEED SIPAAESQFE VRKVVEGDSA EEDENKLPVE
0601: DIVSSREFSF GGKEVDQEPS GEGVTRVDGS ESEEETEEMI FGSSEAAKQF LAELEKASSG IEAHSDEANI SNNMSDRIDG QIVTDSDEDV DTEDEGEEKM
0701: FDTAALAALL KAATGGGSSE GGNFTITSQD GTKLFSMDRP AGLSSSLRPL KPAAAPRANR SNIFSNSNVT MADETEINLS EEEKQKLEKL QSLRVKFLRL
0801: LQRLGHSAED SIAAQVLYRL ALLAGRQAGQ LFSLDAAKKK AVESEAEGNE ELIFSLNILV LGKAGVGKSA TINSILGNQI ASIDAFGLST TSVREISGTV
0901: NGVKITFIDT PGLKSAAMDQ STNAKMLSSV KKVMKKCPPD IVLYVDRLDT QTRDLNNLPL LRTITASLGT SIWKNAIVTL THAASAPPDG PSGTPLSYDV
1001: FVAQCSHIVQ QSIGQAVGDL RLMNPSLMNP VSLVENHPLC RKNREGVKVL PNGQTWRSQL LLLCYSLKVL SETNSLLRPQ EPLDHRKVFG FRVRSPPLPY
1101: LLSWLLQSRA HPKLPGDQGG DSVDSDIEID DVSDSEQEDG EDDEYDQLPP FKPLRKTQLA KLSNEQRKAY FEEYDYRVKL LQKKQWREEL KRMKEMKKNG
1201: KKLGESEFGY PGEEDDPENG APAAVPVPLP DMVLPPSFDS DNSAYRYRYL EPTSQLLTRP VLDTHGWDHD CGYDGVNAEH SLALASRFPA TATVQVTKDK
1301: KEFNIHLDSS VSAKHGENGS TMAGFDIQNV GKQLAYVVRG ETKFKNLRKN KTTVGGSVTF LGENIATGVK LEDQIALGKR LVLVGSTGTM RSQGDSAYGA
1401: NLEVRLREAD FPIGQDQSSF GLSLVKWRGD LALGANLQSQ VSVGRNSKIA LRAGLNNKMS GQITVRTSSS DQLQIALTAI LPIAMSIYKS IRPEATNDKY
1501: SMY
0101: PEATPKPEVV SGETIGVDDV SSLSPKPEAV SDGVGVVEEN KKVKEDVEDI KDDGESKIEN GSVDVDVKQA STDGESESKV KDVEEEDVGT KKDDEGESEL
0201: GGKVDVDDKS DNVIEEEGVE LTDKGDVIVN SSPVESVHVD VAKPGVVVVG DAEGSEELKI NADAETLEVA NKFDQIGDDD SGEFEPVSDK AIEEVEEKFT
0301: SESDSIADSS KLESVDTSAV EPEVVAAESG SEPKDVEKAN GLEKGMTYAE VIKAASAVAD NGTKEEESVL GGIVDDAEEG VKLNNKGDFV VDSSAIEAVN
0401: VDVAKPGVVV VGDVEVSEVL ETDGNIPDVH NKFDPIGQGE GGEVELESDK ATEEGGGKLV SEGDSMVDSS VVDSVDADIN VAEPGVVVVG AAKEAVIKED
0501: DKDDEVDKTI SNIEEPDDLT AAYDGNFELA VKEISEAAKV EPDEPKVGVE VEELPVSESL KVGSVDAEED SIPAAESQFE VRKVVEGDSA EEDENKLPVE
0601: DIVSSREFSF GGKEVDQEPS GEGVTRVDGS ESEEETEEMI FGSSEAAKQF LAELEKASSG IEAHSDEANI SNNMSDRIDG QIVTDSDEDV DTEDEGEEKM
0701: FDTAALAALL KAATGGGSSE GGNFTITSQD GTKLFSMDRP AGLSSSLRPL KPAAAPRANR SNIFSNSNVT MADETEINLS EEEKQKLEKL QSLRVKFLRL
0801: LQRLGHSAED SIAAQVLYRL ALLAGRQAGQ LFSLDAAKKK AVESEAEGNE ELIFSLNILV LGKAGVGKSA TINSILGNQI ASIDAFGLST TSVREISGTV
0901: NGVKITFIDT PGLKSAAMDQ STNAKMLSSV KKVMKKCPPD IVLYVDRLDT QTRDLNNLPL LRTITASLGT SIWKNAIVTL THAASAPPDG PSGTPLSYDV
1001: FVAQCSHIVQ QSIGQAVGDL RLMNPSLMNP VSLVENHPLC RKNREGVKVL PNGQTWRSQL LLLCYSLKVL SETNSLLRPQ EPLDHRKVFG FRVRSPPLPY
1101: LLSWLLQSRA HPKLPGDQGG DSVDSDIEID DVSDSEQEDG EDDEYDQLPP FKPLRKTQLA KLSNEQRKAY FEEYDYRVKL LQKKQWREEL KRMKEMKKNG
1201: KKLGESEFGY PGEEDDPENG APAAVPVPLP DMVLPPSFDS DNSAYRYRYL EPTSQLLTRP VLDTHGWDHD CGYDGVNAEH SLALASRFPA TATVQVTKDK
1301: KEFNIHLDSS VSAKHGENGS TMAGFDIQNV GKQLAYVVRG ETKFKNLRKN KTTVGGSVTF LGENIATGVK LEDQIALGKR LVLVGSTGTM RSQGDSAYGA
1401: NLEVRLREAD FPIGQDQSSF GLSLVKWRGD LALGANLQSQ VSVGRNSKIA LRAGLNNKMS GQITVRTSSS DQLQIALTAI LPIAMSIYKS IRPEATNDKY
1501: SMY
Arabidopsis Description
TOC159Translocase of chloroplast 159, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81283]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.