Factsheet for Solyc05g052160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030414	Potato	cytosol, plastid	93.02	93.02
Solyc03g095220.2.1	Tomato	plastid	72.76	84.56
VIT_02s0109g00360.t01	Wine grape	cytosol	77.74	75.48
VIT_16s0039g02670.t01	Wine grape	cytosol	73.09	71.43
GSMUA_Achr1P22210_001	Banana	cytosol	31.56	68.35
GSMUA_AchrUn_...	Banana	cytosol	70.1	67.63
KRG94982	Soybean	cytosol	68.77	66.35
KRH64901	Soybean	cytosol	67.44	64.86
CDY52130	Canola	cytosol, plastid	66.78	64.22
CDX80936	Canola	cytosol	66.45	63.9
AT5G05000.3	Thale cress	cytosol	65.12	62.62
TraesCS4B01G228900.1	Wheat	cytosol	64.45	59.51
TraesCS4A01G072800.1	Wheat	golgi, plastid	64.45	59.51
KXG39799	Sorghum	cytosol	64.12	59.2
TraesCS4D01G230000.1	Wheat	cytosol	64.12	59.2
Os03t0240500-01	Rice	plastid	63.46	58.41
Zm00001d028373_P002	Maize	cytosol	63.79	57.48
Zm00001d047965_P002	Maize	cytosol	63.79	54.24
HORVU4Hr1G064110.2	Barley	cytosol	63.79	53.93
CDX70178	Canola	cytosol	66.45	26.35
Bra009405.1-P	Field mustard	cytosol	64.12	25.91
Solyc11g043010.1.1	Tomato	nucleus	22.59	9.34
Solyc07g007650.1.1	Tomato	cytosol	15.61	8.66
Solyc01g080780.2.1	Tomato	nucleus	28.9	7.89
Solyc01g111240.2.1	Tomato	nucleus	30.23	6.79
Solyc09g074940.1.1	Tomato	plastid	30.56	6.56

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536
GO:GO:0009707	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1	InterPro:IPR006703	UniProt:K4C1P7	InterPro:P-loop_NTPase
PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc05g052160.2	EnsemblPlants:Solyc05g052160.2.1	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0002765B11	:

Description

Translocase of chloroplast [Source:UniProtKB/TrEMBL;Acc:K4C1P7]

Coordinates

chr5:-:62452953..62455724

Molecular Weight (calculated)

33739.1 Da

IEP (calculated)

10.101

GRAVY (calculated)

-0.097

Length

301 amino acids

Sequence
(BLAST)

001: MASQVIREWV GFQQFPSATQ SKLIELIRKL KQESVSTVTI LVMGKGGVGK SSTVNSILGE RAVAVSAFQS ETPRPVMVSR SWAEFTLNII DTPGLVEGGY
101: VNDQALDLIK RFLLNKTIDV LLYVDRLDTY RVDNLDRQIV KAITDSFGKE IWRRGLVVLT HAQVSPPDGL SYDEFTSRRS EALLKIVRLG ARMKKQEIKA
201: ASIPLVCVEN SGRCNKNELD EKILPNGTAW IPSILQTITE VVVSQSKGIL IDQKLIEGPN PNNKGKLLIP LIATFQYFFV VKRIQTWIKN DISRENRPSW
301: A

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.