Factsheet for VIT_16s0039g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0109g00360.t01	Wine grape	cytosol	84.74	84.19
PGSC0003DMT400013477	Potato	cytosol	76.62	78.41
Solyc03g095220.2.1	Tomato	plastid	64.94	77.22
PGSC0003DMT400030414	Potato	cytosol, plastid	73.05	74.75
GSMUA_AchrUn_...	Banana	cytosol	74.35	73.4
Solyc05g052160.2.1	Tomato	plastid	71.43	73.09
GSMUA_Achr1P22210_001	Banana	cytosol	32.14	71.22
KRG94982	Soybean	cytosol	69.48	68.59
KRH64901	Soybean	cytosol	69.16	68.05
AT5G05000.3	Thale cress	cytosol	68.83	67.73
CDY52130	Canola	cytosol, plastid	67.86	66.77
CDX80936	Canola	cytosol	67.21	66.13
KXG39799	Sorghum	cytosol	68.18	64.42
Os03t0240500-01	Rice	plastid	67.86	63.91
TraesCS4A01G072800.1	Wheat	golgi, plastid	67.53	63.8
TraesCS4B01G228900.1	Wheat	cytosol	67.53	63.8
TraesCS4D01G230000.1	Wheat	cytosol	67.21	63.5
Zm00001d028373_P002	Maize	cytosol	66.88	61.68
Zm00001d047965_P002	Maize	cytosol	66.88	58.19
HORVU4Hr1G064110.2	Barley	cytosol	67.21	58.15
CDX70178	Canola	cytosol	68.51	27.8
Bra009405.1-P	Field mustard	cytosol	64.94	26.85
VIT_11s0118g00260.t01	Wine grape	cytosol, mitochondrion, plastid	27.6	10.65
VIT_03s0038g02070.t01	Wine grape	nucleus	31.49	7.61
VIT_05s0020g01290.t01	Wine grape	cytosol	31.49	7.51
VIT_07s0005g00180.t01	Wine grape	plastid	33.12	6.96

Protein Annotations

EntrezGene:100251020	wikigene:100251020	MapMan:23.1.2.3	Gene3D:3.40.50.300	ProteinID:CBI26578	ProteinID:CBI26578.3
UniProt:D7T7V7	EMBL:FN595750	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536
GO:GO:0009707	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1	InterPro:IPR006703	EntrezGene:LOC100251020	wikigene:LOC100251020
InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF43
SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI00015C82DF	ArrayExpress:VIT_16s0039g02670	EnsemblPlantsGene:VIT_16s0039g02670
EnsemblPlants:VIT_16s0039g02670.t01	unigene:Vvi.19247	RefSeq:XP_002278775	RefSeq:XP_002278775.1	:	:

Description

Translocase of chloroplast [Source:UniProtKB/TrEMBL;Acc:D7T7V7]

Coordinates

chr16:-:3049719..3055054

Molecular Weight (calculated)

34466.1 Da

IEP (calculated)

10.244

GRAVY (calculated)

-0.161

Length

308 amino acids

Sequence
(BLAST)

001: MAYQLIREWT GIQQFPLATR TKLIELLGKL KQENVNTLTI LVMGKGGVGK SSTVNSILGE RAVTVNAFQS EGPRPVMVSR SQAGFTLNII DTPGLVEGGY
101: VNDQAVEIIK RFLLDKTIDV LLYVDRLDVY RTDNLDKQVV KAITDSFGKQ IWRRGVVVLT HGQLSPPDGL NYEDFFSRRS EALMRVVRLG AGIRKQDLQD
201: FAIPVIPVEN SGRCNKNESD EKILPNGTAW IPNLVKTIID LVSNGSKAIL VDKKLIEGPN PNKRGKFLIP LIVAFQYLVV KQIQRTIKDD VKKEPKAPWE
301: LRSANLKF

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.