CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64901	Soybean	cytosol	95.83	95.53
PGSC0003DMT400013477	Potato	cytosol	72.44	75.08
VIT_02s0109g00360.t01	Wine grape	cytosol	73.08	73.55
Solyc03g095220.2.1	Tomato	plastid	60.9	73.36
PGSC0003DMT400030414	Potato	cytosol, plastid	67.95	70.43
VIT_16s0039g02670.t01	Wine grape	cytosol	68.59	69.48
GSMUA_Achr1P22210_001	Banana	cytosol	30.77	69.06
Solyc05g052160.2.1	Tomato	plastid	66.35	68.77
AT5G05000.3	Thale cress	cytosol	66.67	66.45
GSMUA_AchrUn_...	Banana	cytosol	66.35	66.35
CDY52130	Canola	cytosol, plastid	66.03	65.81
CDX80936	Canola	cytosol	65.71	65.5
KXG39799	Sorghum	cytosol	62.82	60.12
Os03t0240500-01	Rice	plastid	61.86	59.02
TraesCS4B01G228900.1	Wheat	cytosol	61.54	58.9
TraesCS4A01G072800.1	Wheat	golgi, plastid	61.54	58.9
TraesCS4D01G230000.1	Wheat	cytosol	61.22	58.59
Zm00001d028373_P002	Maize	cytosol	62.5	58.38
Zm00001d047965_P002	Maize	cytosol	61.54	54.24
HORVU4Hr1G064110.2	Barley	cytosol	61.22	53.65
CDX70178	Canola	cytosol	66.03	27.14
Bra009405.1-P	Field mustard	cytosol	63.78	26.71
KRH30746	Soybean	cytosol	6.09	14.5
KRH03616	Soybean	mitochondrion	26.92	10.55
KRH20190	Soybean	cytosol	26.6	10.44
KRH02257	Soybean	cytosol	27.88	10.12
KRH43000	Soybean	nucleus	31.09	8.19
KRH24252	Soybean	mitochondrion	31.41	8.09
KRH59116	Soybean	nucleus	31.09	7.82
KRH29257	Soybean	endoplasmic reticulum	31.09	7.1

Protein Annotations

EntrezGene:100782594	MapMan:23.1.2.3	Gene3D:3.40.50.300	EMBL:ACUP02012068	EnsemblPlantsGene:GLYMA_19G122600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009507	GO:GO:0009527	GO:GO:0009536	GO:GO:0009707	GO:GO:0015031	GO:GO:0015450
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1
UniProt:I1N8J5	InterPro:IPR006703	EnsemblPlants:KRG94982	ProteinID:KRG94982	ProteinID:KRG94982.1	ProteinID:KRG94983.1
ProteinID:KRG94984.1	ProteinID:KRG94985.1	InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720
PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0001BA6148

Description

hypothetical protein

Coordinates

chr19:+:38082541..38087622

Molecular Weight (calculated)

34822.3 Da

IEP (calculated)

9.917

GRAVY (calculated)

-0.166

Length

312 amino acids

Sequence
(BLAST)

001: MASQIREWSG INTFAPATQT KLLELLGNLK QENVNSLTIL VMGKGGVGKS STVNSIIGER VVSISPFQSE GPRPVMVSRS RAGFTLNIID TPGLIEGGYI
101: NDMALDIIKR FLLNKTIDVL LYVDRLDVYR VDNLDKLVAK AITDSFGKGI WNKAIVTLTH AQFSPPDGLP YDEFFSQRSE SLLKVLRSGA RIKKEAFQAA
201: SIPVVLVENS GRCNKNDSDE KVLPNGTAWI PNLVQTITEI ALNKSESIHV DKNLIEGPNP NQRGKLWIPL VFALQYFLIM KPIKGLIEKD IANERKPTWE
301: RRDAAFRKRD LY

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.