Factsheet for Solyc03g095220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013477	Potato	cytosol	96.91	83.39
Solyc05g052160.2.1	Tomato	plastid	84.56	72.76
VIT_02s0109g00360.t01	Wine grape	cytosol	84.56	70.65
VIT_16s0039g02670.t01	Wine grape	cytosol	77.22	64.94
KRG94982	Soybean	cytosol	73.36	60.9
GSMUA_AchrUn_...	Banana	cytosol	72.97	60.58
KRH64901	Soybean	cytosol	71.81	59.42
CDY52130	Canola	cytosol, plastid	69.88	57.83
CDX80936	Canola	cytosol	69.5	57.51
AT5G05000.3	Thale cress	cytosol	68.34	56.55
GSMUA_Achr1P22210_001	Banana	cytosol	28.96	53.96
KXG39799	Sorghum	cytosol	65.64	52.15
TraesCS4A01G072800.1	Wheat	golgi, plastid	64.48	51.23
TraesCS4B01G228900.1	Wheat	cytosol	64.48	51.23
TraesCS4D01G230000.1	Wheat	cytosol	64.09	50.92
Os03t0240500-01	Rice	plastid	63.71	50.46
Zm00001d028373_P002	Maize	cytosol	64.48	50.0
Zm00001d047965_P002	Maize	cytosol	64.86	47.46
HORVU4Hr1G064110.2	Barley	cytosol	63.71	46.35
CDX70178	Canola	cytosol	70.27	23.98
Bra009405.1-P	Field mustard	cytosol	67.18	23.36
Solyc07g007650.1.1	Tomato	cytosol	18.92	9.02
Solyc11g043010.1.1	Tomato	nucleus	23.55	8.38
Solyc01g080780.2.1	Tomato	nucleus	30.5	7.17
Solyc01g111240.2.1	Tomato	nucleus	31.66	6.11
Solyc09g074940.1.1	Tomato	plastid	30.5	5.63

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009536	GO:GO:0009707	GO:GO:0015450	GO:GO:0016020
GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1	InterPro:IPR006703	UniProt:K4BIU7	InterPro:P-loop_NTPase
PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc03g095220.2	EnsemblPlants:Solyc03g095220.2.1	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0002767682	:

Description

No Description!

Coordinates

chr3:-:56185468..56190076

Molecular Weight (calculated)

28666.9 Da

IEP (calculated)

10.062

GRAVY (calculated)

-0.059

Length

259 amino acids

Sequence
(BLAST)

001: MGKGGVGKSS TVNSIIGERA VAVSAFQSET PRPVMVSRSR AGFTLNIIDT PGLVEGGYVN DQALDLIKKF LLNKTIDVLL YVDRLDAYRV DNLDKQIVKA
101: ITDIFGKEMW CRGIVVLTHA QLSPPDGLTY EEFTSRRSEA LLKIVRMGAR IRKQDIQAAS IPVVLVENSG RCNKNESDEK ILPSGIAWIP NLVQTITDAV
201: LSGSKGILVD QKLIEGPNPN NRGKVLIPFI LAFQYFFVVK RIQRSIKNDI ARETRPSWA

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.