Factsheet for GSMUA_AchrUn_randomP15180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P22210_001
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P07520_001
GSMUA_Achr9P08680_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02280.1	GSMUA_Achr1P22210_001	AT1G02280.1	12869544
AT1G02280.1	GSMUA_AchrUn_...	AT1G02280.1	12869544
AT1G02280.1	GSMUA_Achr11P...	AT1G06950.1	15829604
AT1G02280.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G02280.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G02280.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G02280.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G02280.1	GSMUA_Achr9P07520_001	AT1G63900.1	23118188
AT1G02280.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT1G02280.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT1G02280.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT1G02280.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P22210_001	Banana	cytosol	36.86	82.73
VIT_02s0109g00360.t01	Wine grape	cytosol	75.96	76.45
PGSC0003DMT400013477	Potato	cytosol	72.44	75.08
VIT_16s0039g02670.t01	Wine grape	cytosol	73.4	74.35
Solyc03g095220.2.1	Tomato	plastid	60.58	72.97
PGSC0003DMT400030414	Potato	cytosol, plastid	68.91	71.43
Solyc05g052160.2.1	Tomato	plastid	67.63	70.1
AT5G05000.3	Thale cress	cytosol	68.27	68.05
KRG94982	Soybean	cytosol	66.35	66.35
CDX98810	Canola	cytosol	66.35	66.13
CDY52130	Canola	cytosol, plastid	66.35	66.13
CDX80936	Canola	cytosol	66.03	65.81
KRH64901	Soybean	cytosol	65.38	65.18
Bra032612.1-P	Field mustard	cytosol	59.29	62.29
CDY32453	Canola	cytosol	59.29	62.29
CDY55323	Canola	cytosol	59.29	62.29
Bra033311.1-P	Field mustard	cytosol	58.97	61.74
CDX89987	Canola	cytosol	58.97	61.74
AT1G02280.1	Thale cress	cytosol	58.65	61.62
CDY15228	Canola	cytosol	58.33	61.07
CDX70178	Canola	cytosol	65.71	27.01
Bra009405.1-P	Field mustard	cytosol	62.5	26.17
GSMUA_Achr1P09910_001	Banana	mitochondrion	28.85	11.87
GSMUA_Achr9P31010_001	Banana	cytosol	29.81	9.4
GSMUA_Achr9P31000_001	Banana	cytosol	29.81	8.52
GSMUA_Achr8P19440_001	Banana	cytosol	30.45	7.91
GSMUA_Achr6P20360_001	Banana	cytosol	27.88	7.69
GSMUA_Achr11P...	Banana	cytosol	29.49	6.52
CDX98809	Canola	cytosol	0.64	0.44

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536
GO:GO:0009707	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0046872	GO:GO:0071806	EnsemblPlantsGene:GSMUA_AchrUn_randomG15180_001	EnsemblPlants:GSMUA_AchrUn_randomP15180_001	EnsemblPlants:GSMUA_AchrUn_randomT15180_001	InterPro:G_AIG1
InterPro:IPR006703	UniProt:M0U9C7	InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720
PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI000296C240

Description

Translocase of chloroplast 34, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15180_001]

Coordinates

chrchrUn_random:+:71514731..71534407

Molecular Weight (calculated)

35081.7 Da

IEP (calculated)

10.146

GRAVY (calculated)

-0.182

Length

312 amino acids

Sequence
(BLAST)

001: MTAQVTREWT GIQQFPAATQ NKLHELLGKL KQENVSTLTI LVMGKGGVGK SSTVNSILGE RVASVSAFQS EGLRPIMCSR TRAGFTLNII DTPGLVEGGY
101: VNEQAIEIIK RFLLNKTIDV LLYVDRLDAY RMDSLDRQVI KAITDTFSKR IWQRSLVVLT HAQLSPPDGL NYDDFFAKRS EALMRYVRLG ARIRKQDFEE
201: SSIPVVLVEN SGRCKTNSGG EKILPDGTPW IPNLVEVITT VIANGSKPIT VDQKLIEGPN PNDRGKFFIP LILAFQYFFV VKGIQRAIKQ DIKQERKPLW
301: ELRDMGLANR KF

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.