Factsheet for PGSC0003DMT400030414

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052160.2.1	Tomato	plastid	93.02	93.02
PGSC0003DMT400013477	Potato	cytosol	86.05	86.05
VIT_02s0109g00360.t01	Wine grape	cytosol	79.4	77.1
VIT_16s0039g02670.t01	Wine grape	cytosol	74.75	73.05
GSMUA_AchrUn_...	Banana	cytosol	71.43	68.91
KRG94982	Soybean	cytosol	70.43	67.95
GSMUA_Achr1P22210_001	Banana	cytosol	31.23	67.63
KRH64901	Soybean	cytosol	68.77	66.13
CDY52130	Canola	cytosol, plastid	68.11	65.5
CDX80936	Canola	cytosol	67.77	65.18
AT5G05000.3	Thale cress	cytosol	66.11	63.58
KXG39799	Sorghum	cytosol	65.45	60.43
TraesCS4B01G228900.1	Wheat	cytosol	65.12	60.12
TraesCS4A01G072800.1	Wheat	golgi, plastid	65.12	60.12
TraesCS4D01G230000.1	Wheat	cytosol	64.78	59.82
Zm00001d028373_P002	Maize	cytosol	65.12	58.68
Os03t0240500-01	Rice	plastid	63.46	58.41
Zm00001d047965_P002	Maize	cytosol	64.45	54.8
HORVU4Hr1G064110.2	Barley	cytosol	64.78	54.78
CDX70178	Canola	cytosol	67.77	26.88
Bra009405.1-P	Field mustard	cytosol	64.45	26.04
PGSC0003DMT400078922	Potato	endoplasmic reticulum	26.91	9.68
PGSC0003DMT400024781	Potato	cytosol	30.56	8.69
PGSC0003DMT400029640	Potato	cytosol	28.24	8.55
PGSC0003DMT400004034	Potato	cytosol	30.56	6.73
PGSC0003DMT400016119	Potato	cytosol, nucleus, plastid	29.9	6.61

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	ProteinID:ABB16976	ProteinID:ABB16976.1	EMBL:DQ228327	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009507	GO:GO:0009527	GO:GO:0009536	GO:GO:0009707	GO:GO:0015031	GO:GO:0015450
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1
InterPro:IPR006703	UniProt:M1AU75	InterPro:P-loop_NTPase	PFAM:PF04548	EnsemblPlantsGene:PGSC0003DMG400011646	PGSC:PGSC0003DMG400011646
EnsemblPlants:PGSC0003DMT400030414	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	SUPFAM:SSF52540
TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0002964413	SEG:seg	:	:

Description

GTP-binding [Source:PGSC_GENE;Acc:PGSC0003DMG400011646]

Coordinates

chr5:-:47396140..47400617

Molecular Weight (calculated)

33643.9 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.126

Length

301 amino acids

Sequence
(BLAST)

001: MASQAIREWV GFQQFPSATQ SKLIELIKKL KQESVSTLTI LVMGKGGVGK SSTVNSILGE RAVAVSPFQS ETPRPVMVSR SWAEFTLNII DTPGLVEGGY
101: VNDQALDLIK RFLLNKTIDV LLYVDRLDTY RVDNLDRQIV KAITDSFGKE IWHRGLVVLT HAQVSPPDGL SYDEFTSRRS EALSKIVRLG ARIRKQEVKA
201: SSVPIVCVEN SGRCNKNELD EKILPNGTAW IPNLLQTITE VVVSESKGIL VDKKLIEGPN PNNKGKLLIP LIAAFQYFFV VKRIQKWIKN DIARESRPSW
301: A

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.