Factsheet for Os03t0240500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0240500-01
Os07t0647800-01
Os10t0492000-01
Os10t0492101-00
Os10t0492300-01
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02280.1	Os03t0240500-01	AT1G02280.1	12869544
AT1G02280.1	Os10t0492000-01	AT1G06950.1	15829604
AT1G02280.1	Os10t0492101-00	AT1G06950.1	15829604
AT1G02280.1	Os10t0492300-01	AT1G06950.1	15829604
AT1G02280.1	Os11t0171500-01	AT1G35670.1	19130088
AT1G02280.1	Os12t0169800-00	AT1G35670.1	19130088
AT1G02280.1	Os07t0647800-01	AT1G63900.1	23118188
AT1G02280.1	Os11t0171500-01	AT4G09570.1	19130088
AT1G02280.1	Os12t0169800-00	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G228900.1	Wheat	cytosol	90.21	90.49
TraesCS4A01G072800.1	Wheat	golgi, plastid	90.21	90.49
KXG39799	Sorghum	cytosol	90.21	90.49
TraesCS4D01G230000.1	Wheat	cytosol	89.91	90.18
Zm00001d028373_P002	Maize	cytosol	88.69	86.83
HORVU4Hr1G064110.2	Barley	cytosol	89.3	82.02
Zm00001d047965_P002	Maize	cytosol	88.38	81.64
GSMUA_Achr1P22210_001	Banana	cytosol	32.11	75.54
VIT_16s0039g02670.t01	Wine grape	cytosol	63.91	67.86
VIT_02s0109g00360.t01	Wine grape	cytosol	64.22	67.74
PGSC0003DMT400013477	Potato	cytosol	61.47	66.78
Solyc03g095220.2.1	Tomato	plastid	50.46	63.71
Solyc05g052160.2.1	Tomato	plastid	58.41	63.46
PGSC0003DMT400030414	Potato	cytosol, plastid	58.41	63.46
AT5G05000.3	Thale cress	cytosol	59.33	61.98
KRG94982	Soybean	cytosol	59.02	61.86
CDX98810	Canola	cytosol	58.72	61.34
KRH64901	Soybean	cytosol	58.1	60.7
CDY52130	Canola	cytosol, plastid	58.1	60.7
CDX80936	Canola	cytosol	57.19	59.74
AT1G02280.1	Thale cress	cytosol	52.91	58.25
CDY55323	Canola	cytosol	52.91	58.25
CDX89987	Canola	cytosol	52.91	58.05
Bra033311.1-P	Field mustard	cytosol	52.91	58.05
CDY32453	Canola	cytosol	52.29	57.58
Bra032612.1-P	Field mustard	cytosol	52.29	57.58
CDY15228	Canola	cytosol	52.29	57.38
CDX70178	Canola	cytosol	59.33	25.56
Bra009405.1-P	Field mustard	cytosol	56.27	24.7
Os12t0197400-01	Rice	mitochondrion	26.61	11.05
Os10t0548800-01	Rice	cytosol, plasma membrane, plastid	29.97	9.72
Os05t0151400-01	Rice	plastid	29.66	7.43
Os03t0835100-00	Rice	cytosol, plastid	26.91	7.3
Os01t0356800-00	Rice	plastid	22.02	1.35
CDX98809	Canola	cytosol	0.92	0.67

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	EntrezGene:4332203	ProteinID:ABF94886.1	EMBL:AK099032	ProteinID:BAF11422.1
ProteinID:BAS83187.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536	GO:GO:0009707
GO:GO:0015031	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0046872
GO:GO:0071806	InterPro:G_AIG1	InterPro:IPR006703	EMBL:KC140116	EnsemblPlantsGene:Os03g0240500	EnsemblPlants:Os03t0240500-01
InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF43
UniProt:Q10PB3	SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0000DB4CC6	RefSeq:XP_015631833.1
SEG:seg	:	:	:	:	:

Description

Similar to Toc34-2 protein. (Os03t0240500-01);Similar to Toc34-2 protein. (Os03t0240500-02)

Coordinates

chr3:-:7434060..7438082

Molecular Weight (calculated)

36282.9 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.235

Length

327 amino acids

Sequence
(BLAST)

001: MSAAPIPREW VGLQQFPAAT QTKLHELLGK LKEENVSTLT ILVMGKGGVG KSSTVNSIVG ERVATVSAFQ SEGLRPMMCS RTRAGFTLNI IDTPGLIEGG
101: YINEQAVEII KRFLLGKTID VLLYVDRLDA YRMDTLDDQV IRAVTNSFGK AIWRRTLVVL THAQLSPPDG LDYNDFFTKR SESLLRYIRA GAGVSKRELG
201: DFPLPIALVE NSGRCKTNEN GEKVLPDGTP WIPNLMKEIT TVVSNGSKSI HVDQKLIDGP NPNNRWKMFI PLILMVEYFL VVKGIRRAIH ADISNGKLDD
301: WEQRYRDLVG SKDPVDQKGS SSGNRKA

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.