Factsheet for Os07t0647800-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 4
peroxisome 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, peroxisome, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0240500-01
Os10t0548800-01
Os12t0115950-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	Os03t0240500-01	AT1G02280.1	23118188
AT1G63900.1	Os10t0548800-01	AT3G16620.1	23118188
AT1G63900.1	Os12t0115950-00	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99814	Sorghum	endoplasmic reticulum, golgi	90.24	75.51
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	88.15	74.19
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	88.15	74.19
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	88.15	74.19
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	87.8	73.9
GSMUA_Achr7P18450_001	Banana	endoplasmic reticulum, golgi	77.35	64.72
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	74.91	62.68
KRH71471	Soybean	endoplasmic reticulum, golgi	71.43	60.47
KRH31972	Soybean	endoplasmic reticulum, golgi	70.73	59.88
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	71.08	59.65
Zm00001d007060_P003	Maize	extracellular, plasma membrane	82.58	58.37
CDY25541	Canola	endoplasmic reticulum, vacuole	68.64	57.77
CDY34384	Canola	endoplasmic reticulum, vacuole	68.64	57.43
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	68.64	57.43
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	68.29	57.14
Solyc06g084360.2.1	Tomato	nucleus	70.73	53.28
CDX89169	Canola	extracellular	52.26	42.86
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	51.92	42.82
CDX93939	Canola	extracellular	51.57	42.05
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	45.99	39.05
Bra007725.1-P	Field mustard	plasma membrane	48.78	36.65
CDY63334	Canola	endoplasmic reticulum, extracellular	49.13	36.25

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	ProteinID:BAF22386.1	ProteinID:BAT02927.1	InterPro:GIDE	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:Os07g0647800	EnsemblPlants:Os07t0647800-01	PFAM:PF12483	PANTHER:PTHR12183
PANTHER:PTHR12183:SF18	UniProt:Q0D437	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0000E12C2F	:

Description

Similar to zinc finger family protein. (Os07t0647800-01);Similar to zinc finger (C3HC4-type RING finger) family protein. (Os07t0647800-02)

Coordinates

chr7:-:27050796..27054786

Molecular Weight (calculated)

31229.2 Da

IEP (calculated)

9.812

GRAVY (calculated)

0.137

Length

287 amino acids

Sequence
(BLAST)

001: MLIPWGGVGC CLSAAALYLL GRSSGRDAEV LRSVARAGST KDLAAILDTA SKVLPLVVAV SGRVGSDTPL ICQQSGMRGV IVEETAEQHF LKHNDAGSWI
101: QDSAVMLSVS KEVPWYLDDG TGRVFVVGAR GAAGLVLTVA SEVFEESGRT LVRGTLDYLQ GLKMLGVKRT ERVLPTGTSL TVVGEAIKDD VGTIRIQRPH
201: KGPFYVSPKS IDQLIMNLGK WAKLYQLASM GFAAFGVFLL AKRALQHFLE RKRRHELQKR CVLTNHLFGF RRTCYSHLHS SVVCSLC

Best Arabidopsis Sequence Match ( AT1G63900.2 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGIHW

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.