Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- mitochondrion 1
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89169 | Canola | extracellular | 92.61 | 93.14 |
| AT1G59560.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 58.24 | 60.65 |
| CDY25541 | Canola | endoplasmic reticulum, vacuole | 55.68 | 57.48 |
| CDY34384 | Canola | endoplasmic reticulum, vacuole | 55.68 | 57.14 |
| KRH71471 | Soybean | endoplasmic reticulum, golgi | 52.56 | 54.57 |
| KRH31972 | Soybean | endoplasmic reticulum, golgi | 52.56 | 54.57 |
| CDY63334 | Canola | endoplasmic reticulum, extracellular | 58.52 | 52.96 |
| VIT_07s0104g00630.t01 | Wine grape | plasma membrane, vacuole | 50.57 | 51.9 |
| Os07t0647800-01 | Rice | endoplasmic reticulum | 42.05 | 51.57 |
| EER99814 | Sorghum | endoplasmic reticulum, golgi | 50.0 | 51.31 |
| PGSC0003DMT400051847 | Potato | endoplasmic reticulum, golgi | 49.43 | 50.88 |
| TraesCS2B01G162000.1 | Wheat | endoplasmic reticulum, golgi | 48.3 | 49.85 |
| HORVU2Hr1G024550.6 | Barley | endoplasmic reticulum, golgi | 48.3 | 49.85 |
| TraesCS2D01G141100.1 | Wheat | endoplasmic reticulum, golgi | 48.3 | 49.85 |
| TraesCS2A01G138100.2 | Wheat | endoplasmic reticulum, golgi | 48.01 | 49.56 |
| Solyc06g084360.2.1 | Tomato | nucleus | 49.72 | 45.93 |
| GSMUA_Achr9P07520_001 | Banana | cytosol, mitochondrion, plastid, vacuole | 7.95 | 42.42 |
| Zm00001d007060_P003 | Maize | extracellular, plasma membrane | 42.33 | 36.7 |
| CDX70390 | Canola | cytosol | 14.77 | 28.42 |
| CDX84016 | Canola | extracellular, mitochondrion, plasma membrane, plastid | 18.18 | 24.24 |
| CDY52033 | Canola | cytosol | 12.22 | 23.89 |
| CDY52031 | Canola | mitochondrion | 17.05 | 22.64 |
| CDX84015 | Canola | cytosol | 2.84 | 15.15 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.2 | MapMan:19.2.5.1 | Gene3D:3.30.40.10 |
| GO:A0A078DZS6 | EnsemblPlants:CDX93939 | ProteinID:CDX93939 | ProteinID:CDX93939.1 | InterPro:GIDE | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0006996 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00156765001 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF12483 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR12183 |
| PANTHER:PTHR12183:SF18 | SUPFAM:SSF57850 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniPathway:UPA00143 | UniParc:UPI0004EF1D1E |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaC04g20980D
Coordinates
chrLK031878:+:773241..775357
Molecular Weight (calculated)
38924.9 Da
IEP (calculated)
9.398
GRAVY (calculated)
-0.012
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPWSGLCCI GAVALYLLSR RTARDVDFLE SVTRVDHLKD LESTVLLPSI VAVSGTVGSE TPIKSEHSGI LSVILQETAE QQFLKRNWKF SWVQDTALML
101: PVCKEVPWFL DDGTGRVIVE GARSGIGFAL AAGGEVFEKP EPSSLVSGTL DFLRGLEMLG IRRIERVLPV GTRLTVVGQT IKDGVGDVRI QKPDQGPFYV
201: SPVPLDQLIS NVGKWSRSRF KKASMGLAIV GVILISKPVI KYILVRTGDL LERRRQRLLK KRVVDAAAKR KKLVDAAAKR EERVTSKDLE NGTSRDGDEH
301: DRCVVCLERK CDAAFVPCGH MCCCLACALK LLGKPCPLCR ERGIRILKIY RN
101: PVCKEVPWFL DDGTGRVIVE GARSGIGFAL AAGGEVFEKP EPSSLVSGTL DFLRGLEMLG IRRIERVLPV GTRLTVVGQT IKDGVGDVRI QKPDQGPFYV
201: SPVPLDQLIS NVGKWSRSRF KKASMGLAIV GVILISKPVI KYILVRTGDL LERRRQRLLK KRVVDAAAKR KKLVDAAAKR EERVTSKDLE NGTSRDGDEH
301: DRCVVCLERK CDAAFVPCGH MCCCLACALK LLGKPCPLCR ERGIRILKIY RN
001: MIHLAGFTCC LGGVALYLLT RSTGRDIKSI TRVYQLKDLE QLVEVESKVV PLIIAVSGDV GSETPIKCEH SYVLGVFLKR TAEQQVLRRN WRFSWVRNST
101: LMQPMTKEVP WYLDDGTGRV NVDVSQGELG LALTVGSDVF EKAEPVSLVQ GALGYLKGFK ILGVRHVERV VPIGTPLTVV GEAVRDGMGN VRIQKPEQGP
201: FYVTYIPLDQ LISKLGDLSR RFKYASMGLT VLGVILISKP VIEYILKRIE DTLERRRRQF ALKRVVDAAA RRAKPVTGGG TSRDGDTPDL CVVCLDQKYN
301: TAFVECGHMC CCTPCSLQLR TCPLCRERIQ QVLKIYRH
101: LMQPMTKEVP WYLDDGTGRV NVDVSQGELG LALTVGSDVF EKAEPVSLVQ GALGYLKGFK ILGVRHVERV VPIGTPLTVV GEAVRDGMGN VRIQKPEQGP
201: FYVTYIPLDQ LISKLGDLSR RFKYASMGLT VLGVILISKP VIEYILKRIE DTLERRRRQF ALKRVVDAAA RRAKPVTGGG TSRDGDTPDL CVVCLDQKYN
301: TAFVECGHMC CCTPCSLQLR TCPLCRERIQ QVLKIYRH
Arabidopsis Description
SPL1E3 ubiquitin-protein ligase SPL1 [Source:UniProtKB/Swiss-Prot;Acc:Q94HV7]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.