Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- mitochondrion 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52033 | Canola | cytosol | 68.18 | 25.0 |
| CDY52031 | Canola | mitochondrion | 87.88 | 21.89 |
| Bra016684.1-P | Field mustard | plasma membrane, vacuole | 87.88 | 20.28 |
| CDX84016 | Canola | extracellular, mitochondrion, plasma membrane, plastid | 74.24 | 18.56 |
| AT1G14688.1 | Thale cress | cytosol, mitochondrion, plasma membrane, plastid | 45.45 | 17.65 |
| CDX70390 | Canola | cytosol | 13.64 | 4.92 |
| CDY25541 | Canola | endoplasmic reticulum, vacuole | 22.73 | 4.4 |
| CDY63334 | Canola | endoplasmic reticulum, extracellular | 24.24 | 4.11 |
| CDY34384 | Canola | endoplasmic reticulum, vacuole | 21.21 | 4.08 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 10.61 | 2.9 |
| CDX93939 | Canola | extracellular | 15.15 | 2.84 |
| CDX89169 | Canola | extracellular | 13.64 | 2.57 |
Protein Annotations
| EnsemblPlants:CDX84015 | EnsemblPlantsGene:GSBRNA2T00139826001 | GO:A0A078D4F6 | ProteinID:CDX84015 | ProteinID:CDX84015.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE24EA | MapMan:35.2 | : | : | : |
Description
BnaC08g16300D
Coordinates
chrLK031834:+:1739518..1740395
Molecular Weight (calculated)
7329.7 Da
IEP (calculated)
6.752
GRAVY (calculated)
-0.044
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MIFSGEGSFD KMVGNLKSNS VFYFFYSKIF GTIAVAIAVV KGVGFVRRVL RERSENATDS DNEDNP
001: MFLLVWNSKP TSFYDLLKEK TTNLLVLVSG RVASATTFNS KDGDLLGVVF ENTVIFGQAL KVGTSLTFVG EAVRDKAGNL MIQKSKEQSL IVFSEESSFD
101: EMVNNMKSQS ELCVILAKIF GSIAVAIAVV YGVDYARKVL LPFVWKKKDL GDSSSQNGSS DSEDTDISDF
101: EMVNNMKSQS ELCVILAKIF GSIAVAIAVV YGVDYARKVL LPFVWKKKDL GDSSSQNGSS DSEDTDISDF
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: E3 Ubiquitin ligase (InterPro:IPR022170); Has 30201 Blast hits to 17322 proteins in 780 species: A /.../- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT1G14688]
SUBAcon: [mitochondrion,plasma membrane,plastid,cytosol]
SUBAcon: [mitochondrion,plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.