Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 1
- mitochondrion 2
- plasma membrane 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52033 | Canola | cytosol | 53.03 | 77.78 |
| CDX84015 | Canola | cytosol | 18.56 | 74.24 |
| CDY52031 | Canola | mitochondrion | 70.45 | 70.19 |
| AT1G14688.1 | Thale cress | cytosol, mitochondrion, plasma membrane, plastid | 25.38 | 39.41 |
| CDX70390 | Canola | cytosol | 25.0 | 36.07 |
| CDY34384 | Canola | endoplasmic reticulum, vacuole | 28.03 | 21.57 |
| CDY25541 | Canola | endoplasmic reticulum, vacuole | 27.65 | 21.41 |
| CDY63334 | Canola | endoplasmic reticulum, extracellular | 27.65 | 18.77 |
| CDX93939 | Canola | extracellular | 24.24 | 18.18 |
| CDX89169 | Canola | extracellular | 23.48 | 17.71 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 12.12 | 13.28 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.2 | GO:A0A078D3W5 | EnsemblPlants:CDX84016 |
| ProteinID:CDX84016 | ProteinID:CDX84016.1 | InterPro:GIDE | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0006996 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00139827001 | PFAM:PF12483 | PANTHER:PTHR12183 |
| PANTHER:PTHR12183:SF18 | TMHMM:TMhelix | UniPathway:UPA00143 | UniParc:UPI0004EC1342 | SEG:seg | : |
Description
BnaC08g16290D
Coordinates
chrLK031834:+:1745241..1746900
Molecular Weight (calculated)
28987.2 Da
IEP (calculated)
4.901
GRAVY (calculated)
-0.163
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQIAFYLSC GATACYLWGR RIKGEADSFS SITRVVDFKR LDDLLKEKAS KLLVVVSGKV ASAATPSNGK HEDGPLGAVF NAKVEMGRGT KLEDDGSGWI
101: TKSQNFLFQV KRSPWYLEDS TGVVKVVGAE AAGDFLDALT PHFDMSLSEI FDSIVEPQQG SQTIFRASLD TGTSLTIIGE AARDEAGNLT IQNPNEQPFR
201: IFSGEGSFDK MVANLKSNSE FYFFYSKIFG TIAFAIVVFK GVSFIRRVLR ERAENADSDN EENP
101: TKSQNFLFQV KRSPWYLEDS TGVVKVVGAE AAGDFLDALT PHFDMSLSEI FDSIVEPQQG SQTIFRASLD TGTSLTIIGE AARDEAGNLT IQNPNEQPFR
201: IFSGEGSFDK MVANLKSNSE FYFFYSKIFG TIAFAIVVFK GVSFIRRVLR ERAENADSDN EENP
001: MFLLVWNSKP TSFYDLLKEK TTNLLVLVSG RVASATTFNS KDGDLLGVVF ENTVIFGQAL KVGTSLTFVG EAVRDKAGNL MIQKSKEQSL IVFSEESSFD
101: EMVNNMKSQS ELCVILAKIF GSIAVAIAVV YGVDYARKVL LPFVWKKKDL GDSSSQNGSS DSEDTDISDF
101: EMVNNMKSQS ELCVILAKIF GSIAVAIAVV YGVDYARKVL LPFVWKKKDL GDSSSQNGSS DSEDTDISDF
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: E3 Ubiquitin ligase (InterPro:IPR022170); Has 30201 Blast hits to 17322 proteins in 780 species: A /.../- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT1G14688]
SUBAcon: [mitochondrion,plasma membrane,plastid,cytosol]
SUBAcon: [mitochondrion,plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.