CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84015	Canola	cytosol	21.89	87.88
CDX84016	Canola	extracellular, mitochondrion, plasma membrane, plastid	70.19	70.45
CDY52033	Canola	cytosol	42.26	62.22
AT1G14688.1	Thale cress	cytosol, mitochondrion, plasma membrane, plastid	28.3	44.12
CDX70390	Canola	cytosol	29.06	42.08
CDY34384	Canola	endoplasmic reticulum, vacuole	28.3	21.87
CDY25541	Canola	endoplasmic reticulum, vacuole	27.92	21.7
CDY63334	Canola	endoplasmic reticulum, extracellular	26.79	18.25
CDX93939	Canola	extracellular	22.64	17.05
CDX89169	Canola	extracellular	22.26	16.86
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	12.83	14.11

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.2	GO:A0A078IQ43	UniProt:A0A078IQ43
InterPro:Aspartic_peptidase_AS	EnsemblPlants:CDY52031	ProteinID:CDY52031	ProteinID:CDY52031.1	InterPro:GIDE	GO:GO:0003674
GO:GO:0003824	GO:GO:0004190	GO:GO:0004842	GO:GO:0005575	GO:GO:0006464	GO:GO:0006508
GO:GO:0006996	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00004736001
PFAM:PF12483	ScanProsite:PS00141	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	TMHMM:TMhelix	UniPathway:UPA00143
UniParc:UPI0004EF2415	SEG:seg	:	:	:	:

Description

BnaA08g31440DBnaA08g31440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ43]

Coordinates

chrLK033048:+:52708..54543

Molecular Weight (calculated)

29438.8 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.245

Length

265 amino acids

Sequence
(BLAST)

001: MLQIALYLSC GATACYLWGR RIKGKADSFN SITRVADIKC LDDLLKEKAS NLLVVLSGKV ASATPFNCKH DDDSSSGDVF EAKFEMEYET KKDDDGGLIH
101: KSHNFLFQIN ETPWYLEDGT GLVKVVRAEL ADGYVDTMKP QFDMLSMSEI FQRFENPQEG SKVICRCALD TGTSLTIVGE AARDEAGTLS IQNPKEQSFM
201: IFSGEGSFDK MVANLKSNSE FYFFYSKIFG TIAVAIAVVK GVGFVRRVLR ERSENATDSD NEENP

Best Arabidopsis Sequence Match ( AT1G14688.1 )
(BLAST)

001: MFLLVWNSKP TSFYDLLKEK TTNLLVLVSG RVASATTFNS KDGDLLGVVF ENTVIFGQAL KVGTSLTFVG EAVRDKAGNL MIQKSKEQSL IVFSEESSFD
101: EMVNNMKSQS ELCVILAKIF GSIAVAIAVV YGVDYARKVL LPFVWKKKDL GDSSSQNGSS DSEDTDISDF

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: E3 Ubiquitin ligase (InterPro:IPR022170); Has 30201 Blast hits to 17322 proteins in 780 species: A /.../- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT1G14688]
SUBAcon: [mitochondrion,plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.