CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52031	Canola	mitochondrion	42.08	29.06
CDY52033	Canola	cytosol	27.87	28.33
CDX84016	Canola	extracellular, mitochondrion, plasma membrane, plastid	36.07	25.0
CDY34384	Canola	endoplasmic reticulum, vacuole	34.43	18.37
CDY25541	Canola	endoplasmic reticulum, vacuole	33.88	18.18
CDX89169	Canola	extracellular	28.96	15.14
CDX93939	Canola	extracellular	28.42	14.77
CDY63334	Canola	endoplasmic reticulum, extracellular	30.6	14.4
CDX84015	Canola	cytosol	4.92	13.64
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	16.94	12.86

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.2	GO:A0A078C079	EnsemblPlants:CDX70390
ProteinID:CDX70390	ProteinID:CDX70390.1	InterPro:GIDE	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00140195001	PFAM:PF12483	PANTHER:PTHR12183
PANTHER:PTHR12183:SF18	UniPathway:UPA00143	UniParc:UPI0004EDE62D	:	:	:

Description

BnaC03g04740D

Coordinates

chrLK031791:+:219474..220906

Molecular Weight (calculated)

20273.4 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.139

Length

183 amino acids

Sequence
(BLAST)

001: MFVSSGDYLQ GDTTNILVVV SGKVGSAEPL NCKQGLLSVF VEEKAKVHFE IKLESGHLIK RSLNYLLQQN ETSWYLEDNT GRVNVVEAES AVGFRDILNK
101: YPLNIPSSEI FKKLVKPEGF KVLKYCCHES ALNIGASLTF VGEAVRDKAG NIMIQRPKDL SFLVFGGEGS FNKMVSHRKA NAE

Best Arabidopsis Sequence Match ( AT1G63900.2 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGIHW

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.