CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 4
mitochondrion 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	99.43	100.0
CDX93939	Canola	extracellular	93.14	92.61
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	59.71	61.83
CDY25541	Canola	endoplasmic reticulum, vacuole	56.0	57.48
CDY34384	Canola	endoplasmic reticulum, vacuole	56.0	57.14
KRH71471	Soybean	endoplasmic reticulum, golgi	54.29	56.05
KRH31972	Soybean	endoplasmic reticulum, golgi	53.43	55.16
CDY63334	Canola	endoplasmic reticulum, extracellular	59.71	53.73
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	52.29	53.35
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	51.14	52.34
Os07t0647800-01	Rice	endoplasmic reticulum	42.86	52.26
EER99814	Sorghum	endoplasmic reticulum, golgi	50.57	51.6
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	49.43	50.73
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	49.43	50.73
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	49.43	50.73
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	49.14	50.44
Solyc06g084360.2.1	Tomato	nucleus	51.43	47.24
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	8.57	45.45
Zm00001d007060_P003	Maize	extracellular, plasma membrane	42.29	36.45
CDX70390	Canola	cytosol	15.14	28.96
CDX84016	Canola	extracellular, mitochondrion, plasma membrane, plastid	17.71	23.48
CDY52033	Canola	cytosol	12.0	23.33
CDY52031	Canola	mitochondrion	16.86	22.26
CDX84015	Canola	cytosol	2.57	13.64

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10
GO:A0A078DKL0	EnsemblPlants:CDX89169	ProteinID:CDX89169	ProteinID:CDX89169.1	InterPro:GIDE	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00149325001
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF12483	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183
PANTHER:PTHR12183:SF18	SUPFAM:SSF57850	SignalP:SignalP-noTM	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EE5B0A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA04g00170D

Coordinates

chrLK031857:-:1552018..1553845

Molecular Weight (calculated)

38857.1 Da

IEP (calculated)

10.067

GRAVY (calculated)

-0.040

Length

350 amino acids

Sequence
(BLAST)

001: MEPWSGLCCI GAVALYLLSR RTARDVDFLK SVTRVDQLKD LAESAVLPSI VAVSGTVGSE TPIKCEHSGI LSVILQETAE QQFLKRNWKF SWVQDTALML
101: PVCKEVPWFL DDGTGRVIVE GARSGIGFEL TVGGEVFEKP EASSLVRGTL DFLRGLEMLG IRRIERVLPV GTRLTVVGQT IKDGVGDVRI QKPDQGPFYV
201: SPIPLDHLIS KVGKWSRSRF KKASMGLAVV GVILISKPVI KYILVRTGDF LERRQQRLLK KRVVDAAAKR KKLAAPKREE RVTSKGLENG KSRDGDEHDR
301: CVVCLERKCD AAFVPCGHMC CCLTCALKLL GKPCPLCRKR GIRILKIYRN

Best Arabidopsis Sequence Match ( AT1G59560.1 )
(BLAST)

001: MIHLAGFTCC LGGVALYLLT RSTGRDIKSI TRVYQLKDLE QLVEVESKVV PLIIAVSGDV GSETPIKCEH SYVLGVFLKR TAEQQVLRRN WRFSWVRNST
101: LMQPMTKEVP WYLDDGTGRV NVDVSQGELG LALTVGSDVF EKAEPVSLVQ GALGYLKGFK ILGVRHVERV VPIGTPLTVV GEAVRDGMGN VRIQKPEQGP
201: FYVTYIPLDQ LISKLGDLSR RFKYASMGLT VLGVILISKP VIEYILKRIE DTLERRRRQF ALKRVVDAAA RRAKPVTGGG TSRDGDTPDL CVVCLDQKYN
301: TAFVECGHMC CCTPCSLQLR TCPLCRERIQ QVLKIYRH

Arabidopsis Description

SPL1E3 ubiquitin-protein ligase SPL1 [Source:UniProtKB/Swiss-Prot;Acc:Q94HV7]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.