Factsheet for Bra040424.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 3
endoplasmic reticulum 3
mitochondrion 1
extracellular 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89169	Canola	extracellular	100.0	99.43
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	60.06	61.83
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	56.03	56.85
KRH71471	Soybean	endoplasmic reticulum, golgi	54.31	55.75
KRH31972	Soybean	endoplasmic reticulum, golgi	53.45	54.87
Bra007725.1-P	Field mustard	plasma membrane	58.62	53.4
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	52.59	53.35
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	51.15	52.05
Os07t0647800-01	Rice	endoplasmic reticulum	42.82	51.92
EER99814	Sorghum	endoplasmic reticulum, golgi	50.57	51.31
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	49.43	50.44
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	49.43	50.44
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	49.43	50.44
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	49.14	50.15
Solyc06g084360.2.1	Tomato	nucleus	51.44	46.98
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	8.62	45.45
Zm00001d007060_P003	Maize	extracellular, plasma membrane	42.24	36.21
Bra016685.1-P	Field mustard	cytosol	12.07	23.33
Bra016684.1-P	Field mustard	plasma membrane, vacuole	16.38	19.93

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra040424	EnsemblPlants:Bra040424.1	EnsemblPlants:Bra040424.1-P
InterPro:GIDE	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0006464
GO:GO:0006996	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083
UniProt:M4FH46	PFAM:PF12483	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18
SUPFAM:SSF57850	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000254542A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT1G63900 (E=1e-097) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA04:-:143888..145671

Molecular Weight (calculated)

38698.9 Da

IEP (calculated)

10.067

GRAVY (calculated)

-0.043

Length

348 amino acids

Sequence
(BLAST)

001: MEPWSGLCCI GAVALYLLSR RTARDVDFLK SVTRVDQLKD LESAVLPSIV AVSGTVGSET PIKCEHSGIL SVILQETAEQ QFLKRNWKFS WVQDTALMLP
101: VCKEVPWFLD DGTGRVIVEG ARSGIGFELT VGGEVFEKPE ASSLVRGTLD FLRGLEMLGI RRIERVLPVG TRLTVVGQTI KDGVGDVRIQ KPDQGPFYVS
201: PIPLDHLISK VGKWSRRFKK ASMGLAVVGV ILISKPVIKY ILVRTGDFLE RRQQRLLKKR VVDAAAKRKK LAAPKREERV TSKGLENGKS RDGDEHDRCV
301: VCLERKCDAA FVPCGHMCCC LTCALKLLGK PCPLCRKRGI RILKIYRN

Best Arabidopsis Sequence Match ( AT1G59560.1 )
(BLAST)

001: MIHLAGFTCC LGGVALYLLT RSTGRDIKSI TRVYQLKDLE QLVEVESKVV PLIIAVSGDV GSETPIKCEH SYVLGVFLKR TAEQQVLRRN WRFSWVRNST
101: LMQPMTKEVP WYLDDGTGRV NVDVSQGELG LALTVGSDVF EKAEPVSLVQ GALGYLKGFK ILGVRHVERV VPIGTPLTVV GEAVRDGMGN VRIQKPEQGP
201: FYVTYIPLDQ LISKLGDLSR RFKYASMGLT VLGVILISKP VIEYILKRIE DTLERRRRQF ALKRVVDAAA RRAKPVTGGG TSRDGDTPDL CVVCLDQKYN
301: TAFVECGHMC CCTPCSLQLR TCPLCRERIQ QVLKIYRH

Arabidopsis Description

SPL1E3 ubiquitin-protein ligase SPL1 [Source:UniProtKB/Swiss-Prot;Acc:Q94HV7]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.