Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 4
- plastid 1
- vacuole 2
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040424.1-P | Field mustard | endoplasmic reticulum, extracellular | 61.83 | 60.06 |
| CDX89169 | Canola | extracellular | 61.83 | 59.71 |
| CDX93939 | Canola | extracellular | 60.65 | 58.24 |
| AT1G63900.1 | Thale cress | endoplasmic reticulum, golgi | 57.1 | 56.27 |
| KRH71471 | Soybean | endoplasmic reticulum, golgi | 52.66 | 52.51 |
| VIT_07s0104g00630.t01 | Wine grape | plasma membrane, vacuole | 52.96 | 52.19 |
| KRH31972 | Soybean | endoplasmic reticulum, golgi | 52.07 | 51.92 |
| PGSC0003DMT400051847 | Potato | endoplasmic reticulum, golgi | 52.07 | 51.46 |
| Bra007725.1-P | Field mustard | plasma membrane | 55.92 | 49.48 |
| CDY63334 | Canola | endoplasmic reticulum, extracellular | 56.51 | 49.1 |
| Solyc06g084360.2.1 | Tomato | nucleus | 52.66 | 46.72 |
| EER99814 | Sorghum | endoplasmic reticulum, golgi | 47.34 | 46.65 |
| Os07t0647800-01 | Rice | endoplasmic reticulum | 39.05 | 45.99 |
| HORVU2Hr1G024550.6 | Barley | endoplasmic reticulum, golgi | 44.38 | 43.99 |
| TraesCS2B01G162000.1 | Wheat | endoplasmic reticulum, golgi | 44.38 | 43.99 |
| TraesCS2D01G141100.1 | Wheat | endoplasmic reticulum, golgi | 44.38 | 43.99 |
| TraesCS2A01G138100.2 | Wheat | endoplasmic reticulum, golgi | 44.08 | 43.7 |
| GSMUA_Achr9P07520_001 | Banana | cytosol, mitochondrion, plastid, vacuole | 7.69 | 39.39 |
| Zm00001d007060_P003 | Maize | extracellular, plasma membrane | 37.57 | 31.28 |
| AT1G14688.1 | Thale cress | cytosol, mitochondrion, plasma membrane, plastid | 11.24 | 22.35 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.5.1 | Gene3D:3.30.40.10 | EntrezGene:842247 | ProteinID:AAF79749.1 | ProteinID:AAK62796.1 |
| EMBL:AB028228 | ProteinID:AEE33589.1 | EMBL:AK228076 | ArrayExpress:AT1G59560 | EnsemblPlantsGene:AT1G59560 | RefSeq:AT1G59560 |
| TAIR:AT1G59560 | RefSeq:AT1G59560-TAIR-G | EnsemblPlants:AT1G59560.1 | TAIR:AT1G59560.1 | Unigene:At.452 | EMBL:BT006461 |
| InterPro:GIDE | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006996 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009527 | GO:GO:0009536 | GO:GO:0009707 | GO:GO:0009941 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_564745.1 | PFAM:PF12483 |
| PFAM:PF13920 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF18 | UniProt:Q94HV7 |
| SUPFAM:SSF57850 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A5BC9 | Symbol:ZCF61 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
SPL1E3 ubiquitin-protein ligase SPL1 [Source:UniProtKB/Swiss-Prot;Acc:Q94HV7]
Coordinates
chr1:+:21881534..21883792
Molecular Weight (calculated)
37731.4 Da
IEP (calculated)
9.138
GRAVY (calculated)
0.002
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHLAGFTCC LGGVALYLLT RSTGRDIKSI TRVYQLKDLE QLVEVESKVV PLIIAVSGDV GSETPIKCEH SYVLGVFLKR TAEQQVLRRN WRFSWVRNST
101: LMQPMTKEVP WYLDDGTGRV NVDVSQGELG LALTVGSDVF EKAEPVSLVQ GALGYLKGFK ILGVRHVERV VPIGTPLTVV GEAVRDGMGN VRIQKPEQGP
201: FYVTYIPLDQ LISKLGDLSR RFKYASMGLT VLGVILISKP VIEYILKRIE DTLERRRRQF ALKRVVDAAA RRAKPVTGGG TSRDGDTPDL CVVCLDQKYN
301: TAFVECGHMC CCTPCSLQLR TCPLCRERIQ QVLKIYRH
101: LMQPMTKEVP WYLDDGTGRV NVDVSQGELG LALTVGSDVF EKAEPVSLVQ GALGYLKGFK ILGVRHVERV VPIGTPLTVV GEAVRDGMGN VRIQKPEQGP
201: FYVTYIPLDQ LISKLGDLSR RFKYASMGLT VLGVILISKP VIEYILKRIE DTLERRRRQF ALKRVVDAAA RRAKPVTGGG TSRDGDTPDL CVVCLDQKYN
301: TAFVECGHMC CCTPCSLQLR TCPLCRERIQ QVLKIYRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.