Factsheet for Solyc06g084360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111240.2.1
Solyc06g076360.2.1
Solyc11g043010.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	Solyc01g111240.2.1	AT3G16620.1	23118188
AT1G63900.1	Solyc11g043010.1.1	AT3G16620.1	23118188
AT1G63900.1	Solyc06g076360.2.1	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	87.66	97.66
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	73.75	81.92
KRH71471	Soybean	endoplasmic reticulum, golgi	71.13	79.94
KRH31972	Soybean	endoplasmic reticulum, golgi	70.34	79.06
CDY25541	Canola	endoplasmic reticulum, vacuole	66.4	74.19
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	66.14	73.47
CDY34384	Canola	endoplasmic reticulum, vacuole	66.14	73.47
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	65.62	72.89
EER99814	Sorghum	endoplasmic reticulum, golgi	64.04	71.14
Os07t0647800-01	Rice	endoplasmic reticulum	53.28	70.73
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	63.25	70.67
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	62.99	70.38
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	62.99	70.38
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	62.99	70.38
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	9.71	56.06
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	46.72	52.66
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	46.98	51.44
CDX89169	Canola	extracellular	47.24	51.43
Zm00001d007060_P003	Maize	extracellular, plasma membrane	53.54	50.25
CDX93939	Canola	extracellular	45.93	49.72
Bra007725.1-P	Field mustard	plasma membrane	43.83	43.72
CDY63334	Canola	endoplasmic reticulum, extracellular	44.36	43.44

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	InterPro:GIDE	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CAU1	PFAM:PF12483	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g084360.2	EnsemblPlants:Solyc06g084360.2.1
TMHMM:TMhelix	UniParc:UPI000276B9C3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:49499645..49507146

Molecular Weight (calculated)

42847.9 Da

IEP (calculated)

7.631

GRAVY (calculated)

-0.188

Length

381 amino acids

Sequence
(BLAST)

001: MATKKKKKKN EEEEEEEVDG WIIELLKERF RFYYPFELPE MVPWAGLSCC LSAAALYLLG RSSGRDAEVL KSVTRVNQLK DLAQLLDTAS KVLPLVVTIS
101: GRVGSDTPIN CEYSGLRGVI VEETAEQHFL KHNDAGSWIQ DSALMLSMCK EVPWYLDDGT GRTFIVGGRG ATGLVLTVGS EAFEEAGRSF VRGTLDYLQG
201: LKMLGVKRIE RVLPVGTPLT VVGEAVKDDI GTVRIQRPHK GPFYISHKTI DQLIANLGRW ARWYKYASMG FTAVGVYLLV KHTFHYMMER KRHWELRRRV
301: LAAAAKRAGD EDEGSDATAE NGVDNKDLLM PDLCVICLEQ EYNSVFVPCG HMCCCMTCSS HLTNCPLCRR RIEQVVKTFR H

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.