Factsheet for Zm00001d007060_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028373_P002
Zm00001d028586_P001
Zm00001d029846_P001
Zm00001d047130_P001
Zm00001d047828_P001
Zm00001d047965_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	Zm00001d028373_P002	AT1G02280.1	23118188
AT1G63900.1	Zm00001d047965_P002	AT1G02280.1	23118188
AT1G63900.1	Zm00001d029846_P001	AT3G16620.1	23118188
AT1G63900.1	Zm00001d047130_P001	AT3G16620.1	23118188
AT1G63900.1	Zm00001d028586_P001	AT3G46740.1	23118188
AT1G63900.1	Zm00001d047828_P001	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99814	Sorghum	endoplasmic reticulum, golgi	70.2	83.09
Os07t0647800-01	Rice	endoplasmic reticulum	58.37	82.58
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	64.04	76.25
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	64.04	76.25
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	64.04	76.25
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	64.04	76.25
GSMUA_Achr7P18450_001	Banana	endoplasmic reticulum, golgi	56.4	66.76
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	53.45	63.27
KRH31972	Soybean	endoplasmic reticulum, golgi	51.72	61.95
KRH71471	Soybean	endoplasmic reticulum, golgi	51.48	61.65
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	50.49	59.94
CDY25541	Canola	endoplasmic reticulum, vacuole	50.0	59.53
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	50.25	59.48
CDY34384	Canola	endoplasmic reticulum, vacuole	49.75	58.89
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	49.75	58.89
Solyc06g084360.2.1	Tomato	nucleus	50.25	53.54
CDX93939	Canola	extracellular	36.7	42.33
CDX89169	Canola	extracellular	36.45	42.29
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	36.21	42.24
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	31.28	37.57
Bra007725.1-P	Field mustard	plasma membrane	33.0	35.08
CDY63334	Canola	endoplasmic reticulum, extracellular	33.25	34.7

Protein Annotations

EntrezGene:103647901	MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	UniProt:A0A1D6F2K6	InterPro:GIDE	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538
ProteinID:ONM25663.1	PFAM:PF12483	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	SignalP:SignalP-noTM	UniParc:UPI00084312DC
EnsemblPlantsGene:Zm00001d007060	EnsemblPlants:Zm00001d007060_P003	EnsemblPlants:Zm00001d007060_T003	SEG:seg	:	:

Description

E3 ubiquitin-protein ligase SP1

Coordinates

chr2:+:221010079..221015331

Molecular Weight (calculated)

44994.8 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.026

Length

406 amino acids

Sequence
(BLAST)

001: MMIPWGGVGC CLSAAALYLL GRSSGRDAEV LRSVARAGSM KDLAAILDTA SKVLPLVVAV SGRVGSDTPL ICQQSGMRGV IVEETAEQHF LKHNDAGSWI
101: QDSAVMLSVS KEVPWYLVTN CRCYYAVIFF YFSNKTSNLP WTRTITTVNM LIYANLGLRL WMKMNMSIPN GNISGATIAI DTTVQVQPKT QGWGCCTVTP
201: MDMVTPDLLY RSLHAKQTNK QTNYVISNNF YSQFATGEVF EESGRTLVRG TLDYLQGLKM LGVKRTERVL PTGISLTVVG EAIKDDVGTI RIQRPHKGPF
301: YVSPKSIDQL IMNLGKWAKL YRLASMGFAT FGAFLLAKRA IQHFLERKRR HELQKRVLNA AAQRQAREAE GSIGSSDTEP NSKKDQLVLD ICVICLEQEY
401: NAVFVP

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.