Factsheet for GSMUA_Achr7P18450_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99814	Sorghum	endoplasmic reticulum, golgi	79.01	79.01
Os07t0647800-01	Rice	endoplasmic reticulum	64.72	77.35
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	76.68	77.13
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	76.68	77.13
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	76.38	76.83
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	76.09	76.54
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	11.95	62.12
Zm00001d007060_P003	Maize	extracellular, plasma membrane	66.76	56.4
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	18.37	26.14

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	InterPro:GIDE	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G18450_001	EnsemblPlants:GSMUA_Achr7P18450_001	EnsemblPlants:GSMUA_Achr7T18450_001	InterPro:IPR001841	InterPro:IPR013083
UniProt:M0TIN2	PFAM:PF12483	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00029501ED	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative Mitochondrial ubiquitin ligase activator of nfkb 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18450_001]

Coordinates

chr7:-:21221005..21231906

Molecular Weight (calculated)

37944.2 Da

IEP (calculated)

8.824

GRAVY (calculated)

-0.054

Length

343 amino acids

Sequence
(BLAST)

001: MIPWGGLGCC ASAAALYLLG RNSGRDANVL RSVTRVNQLK DLAVLLDTAC KVLPLVVTVT GRVGSETPIN CEQSGLRGVI VEETAEQHFL KHNDAGSWIQ
101: DSALMLSMSK EVPWYLDDGS GRVYVVGARG ATGLVLTVAS EVFEDSGRSL VRGTLDYLQG LKMLGVKRTE RILPTGTALT IVGEAVKDDV GKIRIQRPHK
201: GPFYVSPKNI DQLIVNLGKW ARWYQFASMG FTVFGVFLLA KHALQYILER RRRRELQKRV LSAAAARQAR DAEGSNQESE KLSDNMKKDH LMLDICVICL
301: EQEYNAVFVP CGHMCCCTTC SSHLTSCPLC RKRIDQVVKT FRH

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.