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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • cytosol 1
  • nucleus 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid, vacuole
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr1P22210_001
GSMUA_Achr8P19440_001
GSMUA_Achr9P03850_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63900.1 GSMUA_Achr1P22210_001 AT1G02280.1 23118188
AT1G63900.1 GSMUA_AchrUn_... AT1G02280.1 23118188
AT1G63900.1 GSMUA_Achr11P... AT3G16620.1 23118188
AT1G63900.1 GSMUA_Achr8P19440_001 AT3G16620.1 23118188
AT1G63900.1 GSMUA_Achr9P03850_001 AT3G46740.1 23118188
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P18450_001 Banana endoplasmic reticulum, golgi 62.12 11.95
PGSC0003DMT400051847 Potato endoplasmic reticulum, golgi 56.06 10.82
VIT_07s0104g00630.t01 Wine grape plasma membrane, vacuole 56.06 10.79
KRH71471 Soybean endoplasmic reticulum, golgi 53.03 10.32
KRH31972 Soybean endoplasmic reticulum, golgi 53.03 10.32
AT1G63900.1 Thale cress endoplasmic reticulum, golgi 51.52 9.91
Solyc06g084360.2.1 Tomato nucleus 56.06 9.71
CDY25541 Canola endoplasmic reticulum, vacuole 48.48 9.38
CDY34384 Canola endoplasmic reticulum, vacuole 48.48 9.33
Bra027667.1-P Field mustard endoplasmic reticulum, golgi 48.48 9.33
Bra040424.1-P Field mustard endoplasmic reticulum, extracellular 45.45 8.62
CDX89169 Canola extracellular 45.45 8.57
CDX93939 Canola extracellular 42.42 7.95
AT1G59560.1 Thale cress endoplasmic reticulum, extracellular, golgi 39.39 7.69
Bra007725.1-P Field mustard plasma membrane 36.36 6.28
CDY63334 Canola endoplasmic reticulum, extracellular 36.36 6.17
GSMUA_Achr10P... Banana extracellular, plasma membrane, plastid 9.09 2.49
Protein Annotations
EnsemblPlants:GSMUA_Achr9P07520_001EnsemblPlants:GSMUA_Achr9T07520_001EnsemblPlantsGene:GSMUA_Achr9G07520_001PANTHER:PTHR12183PANTHER:PTHR12183:SF18UniParc:UPI000295C3FF
UniProt:M0TYB1MapMan:35.2::::
Description
zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G07520_001]
Coordinates
chr9:+:4827548..4828639
Molecular Weight (calculated)
7209.6 Da
IEP (calculated)
4.579
GRAVY (calculated)
0.089
Length
66 amino acids
Sequence
(BLAST)
1: MRFLSSHAEN LRSVTRGNQL NDLGECVPLF EILVLVVSVT GRVGSETPIN CEQSGLKSVV VSETYE
Best Arabidopsis Sequence Match ( AT1G63900.2 )
(BLAST)
001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGIHW
Arabidopsis Description
SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.