Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63900.1 | KRH24252 | AT3G16620.1 | 23118188 |
| AT1G63900.1 | KRH29257 | AT3G16620.1 | 23118188 |
| AT1G63900.1 | KRH10219 | AT3G46740.1 | 23118188 |
| AT1G63900.1 | KRH23106 | AT3G46740.1 | 23118188 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31972 | Soybean | endoplasmic reticulum, golgi | 97.94 | 97.94 |
| VIT_07s0104g00630.t01 | Wine grape | plasma membrane, vacuole | 81.42 | 80.47 |
| PGSC0003DMT400051847 | Potato | endoplasmic reticulum, golgi | 79.94 | 79.24 |
| CDY25541 | Canola | endoplasmic reticulum, vacuole | 76.11 | 75.66 |
| AT1G63900.1 | Thale cress | endoplasmic reticulum, golgi | 76.4 | 75.51 |
| CDY34384 | Canola | endoplasmic reticulum, vacuole | 76.11 | 75.22 |
| Bra027667.1-P | Field mustard | endoplasmic reticulum, golgi | 76.11 | 75.22 |
| EER99814 | Sorghum | endoplasmic reticulum, golgi | 72.86 | 72.01 |
| Os07t0647800-01 | Rice | endoplasmic reticulum | 60.47 | 71.43 |
| Solyc06g084360.2.1 | Tomato | nucleus | 79.94 | 71.13 |
| TraesCS2D01G141100.1 | Wheat | endoplasmic reticulum, golgi | 69.91 | 69.5 |
| TraesCS2B01G162000.1 | Wheat | endoplasmic reticulum, golgi | 69.91 | 69.5 |
| TraesCS2A01G138100.2 | Wheat | endoplasmic reticulum, golgi | 69.62 | 69.21 |
| HORVU2Hr1G024550.6 | Barley | endoplasmic reticulum, golgi | 69.62 | 69.21 |
| Bra040424.1-P | Field mustard | endoplasmic reticulum, extracellular | 55.75 | 54.31 |
| CDX89169 | Canola | extracellular | 56.05 | 54.29 |
| GSMUA_Achr9P07520_001 | Banana | cytosol, mitochondrion, plastid, vacuole | 10.32 | 53.03 |
| AT1G59560.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 52.51 | 52.66 |
| CDX93939 | Canola | extracellular | 54.57 | 52.56 |
| Zm00001d007060_P003 | Maize | extracellular, plasma membrane | 61.65 | 51.48 |
| CDY63334 | Canola | endoplasmic reticulum, extracellular | 51.62 | 44.99 |
| Bra007725.1-P | Field mustard | plasma membrane | 50.15 | 44.5 |
Protein Annotations
| EntrezGene:100800734 | MapMan:19.2.2.1.5.3.2 | MapMan:19.2.5.1 | Gene3D:3.30.40.10 | EMBL:ACUP02000899 | InterPro:GIDE |
| EnsemblPlantsGene:GLYMA_02G149800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0006996 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | UniProt:I1JFC9 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH71471 | ProteinID:KRH71471 |
| ProteinID:KRH71471.1 | PFAM:PF12483 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF18 |
| SUPFAM:SSF57850 | SignalP:SignalP-noTM | UniParc:UPI0002336E15 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:+:15394116..15399016
Molecular Weight (calculated)
37412.5 Da
IEP (calculated)
8.657
GRAVY (calculated)
-0.062
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPWGGLSCC LSAAALYLLG RSSGRDAEIL KSVTRVNQLK ELAQLLDAEI LPLIVTISGR VSSETPINCE FSGLRGVIVE ETAEQHFLKH NDAGSWIQDS
101: ALMLSMSKEV PWYLDDGTDR VHVVGARGAA GFALPVGSEA FEESGRSLVR GTLDYLQGLK MLGVKRIERV LPVGTSLTVV GEAAKDDVGA FRIQRPHKGP
201: FYVSPKTIDQ LIANLGKWAR WYKYASMGLT VFGAYLIAKH AIRYILERRR RSELQRRVLA AAAKKSGQNN DVEKADGLSD GVKKDRLMPD LCVICLEQEY
301: NAVFVPCGHM CCCTTCSSHL TNCPLCRRQI EKVVKTFRH
101: ALMLSMSKEV PWYLDDGTDR VHVVGARGAA GFALPVGSEA FEESGRSLVR GTLDYLQGLK MLGVKRIERV LPVGTSLTVV GEAAKDDVGA FRIQRPHKGP
201: FYVSPKTIDQ LIANLGKWAR WYKYASMGLT VFGAYLIAKH AIRYILERRR RSELQRRVLA AAAKKSGQNN DVEKADGLSD GVKKDRLMPD LCVICLEQEY
301: NAVFVPCGHM CCCTTCSSHL TNCPLCRRQI EKVVKTFRH
001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH
Arabidopsis Description
SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.