Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24252 | Soybean | mitochondrion | 83.32 | 94.05 |
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 34.6 | 67.86 |
| CDX70657 | Canola | cytosol | 14.05 | 66.21 |
| CDY66172 | Canola | cytosol | 45.94 | 63.69 |
| PGSC0003DMT400024781 | Potato | cytosol | 47.62 | 61.47 |
| CDX70659 | Canola | cytosol | 4.75 | 60.19 |
| CDX70551 | Canola | cytosol | 15.73 | 59.72 |
| AT3G16620.1 | Thale cress | cytosol | 47.11 | 59.14 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 54.13 | 58.04 |
| CDY43117 | Canola | cytosol | 46.74 | 57.88 |
| Solyc11g043010.1.1 | Tomato | nucleus | 30.36 | 57.01 |
| AT2G16640.3 | Thale cress | cytosol | 50.18 | 56.88 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 44.04 | 56.63 |
| Bra022170.1-P | Field mustard | nucleus | 44.04 | 56.63 |
| CDX78660 | Canola | cytosol | 27.43 | 56.56 |
| Bra006330.1-P | Field mustard | cytosol | 27.43 | 56.56 |
| EER91974 | Sorghum | cytosol | 40.16 | 55.51 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 40.09 | 54.37 |
| Zm00001d029846_P001 | Maize | plastid | 39.65 | 54.36 |
| Zm00001d047130_P001 | Maize | cytosol | 40.31 | 53.86 |
| CDX92087 | Canola | cytosol | 46.53 | 53.81 |
| CDX70550 | Canola | cytosol | 10.68 | 51.59 |
| CDX70641 | Canola | cytosol | 30.07 | 51.25 |
| KRH30746 | Soybean | cytosol | 4.9 | 51.15 |
| Solyc01g111240.2.1 | Tomato | nucleus | 49.74 | 50.71 |
| PGSC0003DMT400004034 | Potato | cytosol | 50.62 | 50.58 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 39.65 | 50.47 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 39.36 | 50.37 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 39.43 | 50.19 |
| CDX70658 | Canola | cytosol | 4.17 | 44.53 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 37.6 | 42.8 |
| GSMUA_Achr11P... | Banana | cytosol | 39.94 | 38.72 |
| KRH03616 | Soybean | mitochondrion | 22.17 | 38.07 |
| KRH20190 | Soybean | cytosol | 21.65 | 37.23 |
| KRH43000 | Soybean | nucleus | 29.55 | 34.09 |
| KRH59116 | Soybean | nucleus | 30.07 | 33.15 |
| KRG94982 | Soybean | cytosol | 7.1 | 31.09 |
| KRH64901 | Soybean | cytosol | 6.8 | 29.71 |
| KRH02257 | Soybean | cytosol | 14.26 | 22.67 |
Protein Annotations
| EntrezGene:100776898 | MapMan:23.1.2.2 | Gene3D:3.40.50.300 | EMBL:ACUP02006794 | ncoils:Coil | EnsemblPlantsGene:GLYMA_11G105500 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| GO:GO:0016817 | InterPro:G_AIG1 | UniProt:I1LIY4 | InterPro:IPR006703 | EnsemblPlants:KRH29257 | ProteinID:KRH29257 |
| ProteinID:KRH29257.1 | InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 | PFscan:PS51720 | PANTHER:PTHR10903 |
| PANTHER:PTHR10903:SF47 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD | InterPro:Toc86_159 | UniParc:UPI000233C284 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:8015639..8020644
Molecular Weight (calculated)
149346.0 Da
IEP (calculated)
4.371
GRAVY (calculated)
-0.705
Length
1367 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDYEADGFGA NGEGESKRVV GGEGVSEESV AGSDQVKGLE TEEVFQEAME PREQVHDQGS ELNLEDTVVD KQYDAETGVA LTSALADGNT PDAAQEPDYF
0101: KEAVLADADS GKLGGDDVIS EQDLEERDGQ GSDNVHLDGV DSGVPVDGEI FDESHGVGDD NLESSDGGGG KEESGLNSDR EMLVQENGTM VDENSGLVSE
0201: RAEIDDSEFM TPRENGGMIF ENGSTNKVDG VATEPIMESE SSEVIPAQGT DAGDLKECGS DTELGDDKIE VKLNASADPS GEIQDDTSEE VHDNSAHMTL
0301: EHQDEVTRDM KDDSLGTNMS HEDRNGEEMS TDGIQNTEVR DYGNGHAEAE SSPPFLENSS TNLTPSIQEA SAAEPKEASN KDDQSQIFDE EHRDHDNTSV
0401: VEEPESIQEK IIQQTGTTPS AAEPKEASNK DDQSQIFDEE HRDHDNTSVV EEPESIQEKI IQQTGTTPSA AEPKEASNKD DQSQIFDEEH RDHDNTSVVE
0501: EPESIQEKTI QQTGTTPSAA EPKEASNKDD QSQIFDEEHR DHDNTSVVEE PESIQEKIIQ QTGTTQVTGE QHVQPAADIS SSSKRSAGTV PTPVRPSSEN
0601: SPAAGPTPVH PTGLGRAAPL LEPASRVVQQ PRANGAVSNT QSQQMEDSSS GEAEEYDETR EKLQMIRVKF LRLAHRLGQT PHNVVVAQVL YRLGLAEQLR
0701: GRNGGRVGAF SFDRASAMAE QLEAAGQEPL DFSCTIMVLG KTGVGKSATI NSIFDEVKFN TSAFHMGTKK VQDVVGTVQG IKVRVIDTPG LLPSWADQRS
0801: NEKILHSVKH FIKKTPPDIV LYLDRLDMQS RDFSDMPLLR TITEIFGPSI WFNAIVVLTH AASAPPEGPN GTASSYDWFV TQRSHVVQQA IRQAAGDMRL
0901: MNPVSLVENH SACRTNRAGQ RVLPNGQVWK PHLLLLSFAS KILAEANALL KLQDSPPGKP YVARTRAPPL PFLLSTLLQS RPQLKLPEEQ FGDEDSLDDD
1001: LGESSESDDE NEHDDLPPFK PLTKAQVEEL SKAHKKAYFD ELEYREKLLM KKQLKEEKKQ RKMLKKRAES AKDLPSDHSE NVEEESGGAA SVPVPMPDLA
1101: LPASFDSDNP THRYRYLDSS SNQWLVRPVL ETHGWDHDVG YEGLNVERLF VVKEKIPLSF SGQVTKDKKD ANVQMEISSS VKHGKGKATS LGFDLQTVGK
1201: DLAYTLRSET RFTNFRRNNA TAGLSFTLLG DALSSGLKIE DKLVASKRFK LVVSGGAMTG RGDIAYGGSL EAQLRDKDYP LGRFLTTLGL SVMDWHGDLA
1301: VGCNVQSQIP VGRHTNLVAR ANLNNRGAGQ ISIRLNSSEQ LQIALIGLIP LLKKLVGYHQ QTQFGQY
0101: KEAVLADADS GKLGGDDVIS EQDLEERDGQ GSDNVHLDGV DSGVPVDGEI FDESHGVGDD NLESSDGGGG KEESGLNSDR EMLVQENGTM VDENSGLVSE
0201: RAEIDDSEFM TPRENGGMIF ENGSTNKVDG VATEPIMESE SSEVIPAQGT DAGDLKECGS DTELGDDKIE VKLNASADPS GEIQDDTSEE VHDNSAHMTL
0301: EHQDEVTRDM KDDSLGTNMS HEDRNGEEMS TDGIQNTEVR DYGNGHAEAE SSPPFLENSS TNLTPSIQEA SAAEPKEASN KDDQSQIFDE EHRDHDNTSV
0401: VEEPESIQEK IIQQTGTTPS AAEPKEASNK DDQSQIFDEE HRDHDNTSVV EEPESIQEKI IQQTGTTPSA AEPKEASNKD DQSQIFDEEH RDHDNTSVVE
0501: EPESIQEKTI QQTGTTPSAA EPKEASNKDD QSQIFDEEHR DHDNTSVVEE PESIQEKIIQ QTGTTQVTGE QHVQPAADIS SSSKRSAGTV PTPVRPSSEN
0601: SPAAGPTPVH PTGLGRAAPL LEPASRVVQQ PRANGAVSNT QSQQMEDSSS GEAEEYDETR EKLQMIRVKF LRLAHRLGQT PHNVVVAQVL YRLGLAEQLR
0701: GRNGGRVGAF SFDRASAMAE QLEAAGQEPL DFSCTIMVLG KTGVGKSATI NSIFDEVKFN TSAFHMGTKK VQDVVGTVQG IKVRVIDTPG LLPSWADQRS
0801: NEKILHSVKH FIKKTPPDIV LYLDRLDMQS RDFSDMPLLR TITEIFGPSI WFNAIVVLTH AASAPPEGPN GTASSYDWFV TQRSHVVQQA IRQAAGDMRL
0901: MNPVSLVENH SACRTNRAGQ RVLPNGQVWK PHLLLLSFAS KILAEANALL KLQDSPPGKP YVARTRAPPL PFLLSTLLQS RPQLKLPEEQ FGDEDSLDDD
1001: LGESSESDDE NEHDDLPPFK PLTKAQVEEL SKAHKKAYFD ELEYREKLLM KKQLKEEKKQ RKMLKKRAES AKDLPSDHSE NVEEESGGAA SVPVPMPDLA
1101: LPASFDSDNP THRYRYLDSS SNQWLVRPVL ETHGWDHDVG YEGLNVERLF VVKEKIPLSF SGQVTKDKKD ANVQMEISSS VKHGKGKATS LGFDLQTVGK
1201: DLAYTLRSET RFTNFRRNNA TAGLSFTLLG DALSSGLKIE DKLVASKRFK LVVSGGAMTG RGDIAYGGSL EAQLRDKDYP LGRFLTTLGL SVMDWHGDLA
1301: VGCNVQSQIP VGRHTNLVAR ANLNNRGAGQ ISIRLNSSEQ LQIALIGLIP LLKKLVGYHQ QTQFGQY
0001: MGDGTEFVVR SDREDKKLAE DRISDEQVVK NELVRSDEVR DDNEDEVFEE AIGSENDEQE EEEDPKRELF ESDDLPLVET LKSSMVEHEV EDFEEAVGDL
0101: DETSSNEGGV KDFTAVGESH GAGEAEFDVL ATKMNGDKGE GGGGGSYDKV ESSLDVVDTT ENATSTNTNG SNLAAEHVGI ENGKTHSFLG NGIASPKNKE
0201: VVAEVIPKDD GIEEPWNDGI EVDNWEERVD GIQTEQEVEE GEGTTENQFE KRTEEEVVEG EGTSKNLFEK QTEQDVVEGE GTSKDLFENG SVCMDSESEA
0301: ERNGETGAAY TSNIVTNASG DNEVSSAVTS SPLEESSSGE KGETEGDSTC LKPEQHLASS PHSYPESTEV HSNSGSPGVT SREHKPVQSA NGGHDVQSPQ
0401: PNKELEKQQS SRVHVDPEIT ENSHVETEPE VVSSVSPTES RSNPAALPPA RPAGLGRASP LLEPASRAPQ QSRVNGNGSH NQFQQAEDST TTEADEHDET
0501: REKLQLIRVK FLRLAHRLGQ TPHNVVVAQV LYRLGLAEQL RGRNGSRVGA FSFDRASAMA EQLEAAGQDP LDFSCTIMVL GKSGVGKSAT INSIFDEVKF
0601: CTDAFQMGTK RVQDVEGLVQ GIKVRVIDTP GLLPSWSDQA KNEKILNSVK AFIKKNPPDI VLYLDRLDMQ SRDSGDMPLL RTISDVFGPS IWFNAIVGLT
0701: HAASVPPDGP NGTASSYDMF VTQRSHVIQQ AIRQAAGDMR LMNPVSLVEN HSACRTNRAG QRVLPNGQVW KPHLLLLSFA SKILAEANAL LKLQDNIPGR
0801: PFAARSKAPP LPFLLSSLLQ SRPQPKLPEQ QYGDEEDEDD LEESSDSDEE SEYDQLPPFK SLTKAQMATL SKSQKKQYLD EMEYREKLLM KKQMKEERKR
0901: RKMFKKFAAE IKDLPDGYSE NVEEESGGPA SVPVPMPDLS LPASFDSDNP THRYRYLDSS NQWLVRPVLE THGWDHDIGY EGVNAERLFV VKEKIPISVS
1001: GQVTKDKKDA NVQLEMASSV KHGEGKSTSL GFDMQTVGKE LAYTLRSETR FNNFRRNKAA AGLSVTHLGD SVSAGLKVED KFIASKWFRI VMSGGAMTSR
1101: GDFAYGGTLE AQLRDKDYPL GRFLTTLGLS VMDWHGDLAI GGNIQSQVPI GRSSNLIARA NLNNRGAGQV SVRVNSSEQL QLAMVAIVPL FKKLLSYYYP
1201: QTQYGQ
0101: DETSSNEGGV KDFTAVGESH GAGEAEFDVL ATKMNGDKGE GGGGGSYDKV ESSLDVVDTT ENATSTNTNG SNLAAEHVGI ENGKTHSFLG NGIASPKNKE
0201: VVAEVIPKDD GIEEPWNDGI EVDNWEERVD GIQTEQEVEE GEGTTENQFE KRTEEEVVEG EGTSKNLFEK QTEQDVVEGE GTSKDLFENG SVCMDSESEA
0301: ERNGETGAAY TSNIVTNASG DNEVSSAVTS SPLEESSSGE KGETEGDSTC LKPEQHLASS PHSYPESTEV HSNSGSPGVT SREHKPVQSA NGGHDVQSPQ
0401: PNKELEKQQS SRVHVDPEIT ENSHVETEPE VVSSVSPTES RSNPAALPPA RPAGLGRASP LLEPASRAPQ QSRVNGNGSH NQFQQAEDST TTEADEHDET
0501: REKLQLIRVK FLRLAHRLGQ TPHNVVVAQV LYRLGLAEQL RGRNGSRVGA FSFDRASAMA EQLEAAGQDP LDFSCTIMVL GKSGVGKSAT INSIFDEVKF
0601: CTDAFQMGTK RVQDVEGLVQ GIKVRVIDTP GLLPSWSDQA KNEKILNSVK AFIKKNPPDI VLYLDRLDMQ SRDSGDMPLL RTISDVFGPS IWFNAIVGLT
0701: HAASVPPDGP NGTASSYDMF VTQRSHVIQQ AIRQAAGDMR LMNPVSLVEN HSACRTNRAG QRVLPNGQVW KPHLLLLSFA SKILAEANAL LKLQDNIPGR
0801: PFAARSKAPP LPFLLSSLLQ SRPQPKLPEQ QYGDEEDEDD LEESSDSDEE SEYDQLPPFK SLTKAQMATL SKSQKKQYLD EMEYREKLLM KKQMKEERKR
0901: RKMFKKFAAE IKDLPDGYSE NVEEESGGPA SVPVPMPDLS LPASFDSDNP THRYRYLDSS NQWLVRPVLE THGWDHDIGY EGVNAERLFV VKEKIPISVS
1001: GQVTKDKKDA NVQLEMASSV KHGEGKSTSL GFDMQTVGKE LAYTLRSETR FNNFRRNKAA AGLSVTHLGD SVSAGLKVED KFIASKWFRI VMSGGAMTSR
1101: GDFAYGGTLE AQLRDKDYPL GRFLTTLGLS VMDWHGDLAI GGNIQSQVPI GRSSNLIARA NLNNRGAGQV SVRVNSSEQL QLAMVAIVPL FKKLLSYYYP
1201: QTQYGQ
Arabidopsis Description
TOC132Translocase of chloroplast 132, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLF3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.