Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 1
- mitochondrion 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022170.1-P | Field mustard | nucleus | 99.15 | 99.15 |
| CDY66172 | Canola | cytosol | 84.29 | 90.87 |
| CDY43117 | Canola | cytosol | 85.61 | 82.43 |
| CDX92087 | Canola | cytosol | 85.89 | 77.24 |
| CDX70659 | Canola | cytosol | 7.34 | 72.22 |
| AT3G16620.1 | Thale cress | cytosol | 73.94 | 72.18 |
| CDX70657 | Canola | cytosol | 19.19 | 70.34 |
| CDX97269 | Canola | cytosol | 4.14 | 66.67 |
| CDX70551 | Canola | cytosol | 21.26 | 62.78 |
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 40.83 | 62.27 |
| CDX78660 | Canola | cytosol | 37.63 | 60.33 |
| PGSC0003DMT400024781 | Potato | cytosol | 54.19 | 54.39 |
| CDX70641 | Canola | cytosol | 40.73 | 53.99 |
| CDX70550 | Canola | cytosol | 13.92 | 52.3 |
| KRH24252 | Soybean | mitochondrion | 56.63 | 49.71 |
| Solyc11g043010.1.1 | Tomato | nucleus | 33.96 | 49.59 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 46.19 | 48.71 |
| EER91974 | Sorghum | cytosol | 45.16 | 48.53 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 57.48 | 47.92 |
| Zm00001d029846_P001 | Maize | plastid | 44.87 | 47.84 |
| Zm00001d047130_P001 | Maize | cytosol | 44.59 | 46.33 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 45.06 | 44.6 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 44.5 | 44.29 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 44.59 | 44.13 |
| KRH29257 | Soybean | endoplasmic reticulum | 56.63 | 44.04 |
| CDX70658 | Canola | cytosol | 5.27 | 43.75 |
| PGSC0003DMT400004034 | Potato | cytosol | 56.07 | 43.57 |
| Solyc01g111240.2.1 | Tomato | nucleus | 54.94 | 43.55 |
| CDY50376 | Canola | cytosol | 27.94 | 42.61 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 43.18 | 38.22 |
| CDX97270 | Canola | cytosol | 14.86 | 35.99 |
| CDX92471 | Canola | cytosol | 25.4 | 34.48 |
| CDX91288 | Canola | cytosol | 25.49 | 34.48 |
| CDY35813 | Canola | cytosol | 25.31 | 34.35 |
| GSMUA_Achr11P... | Banana | cytosol | 43.84 | 33.05 |
| CDX89987 | Canola | cytosol | 8.09 | 28.86 |
| CDY55323 | Canola | cytosol | 8.0 | 28.62 |
| CDY32453 | Canola | cytosol | 8.0 | 28.62 |
| CDY15228 | Canola | cytosol | 8.0 | 28.52 |
| CDY52130 | Canola | cytosol, plastid | 8.37 | 28.43 |
| CDX98810 | Canola | cytosol | 8.28 | 28.11 |
| CDX80936 | Canola | cytosol | 8.28 | 28.11 |
| CDY44175 | Canola | cytosol | 12.04 | 13.85 |
| CDX70178 | Canola | cytosol | 9.5 | 13.31 |
| CDY22896 | Canola | cytosol | 11.85 | 12.44 |
| CDX98809 | Canola | cytosol | 1.41 | 3.33 |
Protein Annotations
| MapMan:23.1.2.2 | Gene3D:3.40.50.300 | GO:A0A078DS47 | EnsemblPlants:CDX92086 | ProteinID:CDX92086 | ProteinID:CDX92086.1 |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | GO:GO:0016817 | EnsemblPlantsGene:GSBRNA2T00153772001 | InterPro:G_AIG1 | InterPro:IPR006703 | InterPro:P-loop_NTPase |
| PFAM:PF04548 | PFAM:PF11886 | PFscan:PS51720 | PANTHER:PTHR10903 | PANTHER:PTHR10903:SF47 | SUPFAM:SSF52540 |
| TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD | InterPro:Toc86_159 | UniParc:UPI0004EF4892 | SEG:seg | : |
Description
BnaA05g23210D
Coordinates
chrLK031871:-:94457..99695
Molecular Weight (calculated)
117301.0 Da
IEP (calculated)
4.927
GRAVY (calculated)
-0.641
Length
1063 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGEDGRQEVY SVGLQEYEVS DVQIVRRKND DANELPGKVV GKSTFIDLAG SERGADTTDN DRQTSFGSLN AEYECKLGIF LTILVNCAYL ARICFRACME
0101: EKKLADDGNS DEQVEKIELV VSDVDARDTE DEEAIDSSKP ESLQPDDLPS EEVKDPKEVN GESHGEANLQ HITTGEAVPG FVTSRMNGDE GEAGAENVHE
0201: TATHSFSENG TVSLEKKQPV ADVIGETRNG GIEEEIKEEI VDVSGAQRNG ERASGERSFN DSIQVASAGT SSPLEKSSSE ENGETEGHIS REHDTVQNGG
0301: LGVEHTSQPN KEFEKQRGSR VNMSPEIKER KSEVASSVSP TESTSNIAAS PPPARPAGHG RDASLLEPTP RVPHQPRVNG NASQNQSEQA EDPTPAETDE
0401: HDETREKLQL IRVKFLRLSH RLGQTPHNVV VAQVLYRLGL AEQLRGRNGS RVGAFSFDRA SSMAEQLEAA GQDPLDFSCT VMVLGKSGVG KSATINSIFD
0501: EVKICTDAFQ MGTKRVQEVE GFVQGIKVRV IDTPGLLPSW SDQHKNEKML KSVKVFIKKN PPDIVLYLDR LDMQSRDSGD TPLLRTITDV FGPSIWFNAI
0601: VGLTHAASAP PDGPNGTASS YDMFVTQRSH VIQQAIRQAA GDMRLMNPVS LVENHSACRT NRAGQRVLPN GQVWKPHLLL LSFASKILAE ANALLKLQDN
0701: NTPGRPFVAR SKAPPLPLLL SSFLQSRPQA KLPEEQYGDE EDEDDLDESS GSDEESEYDQ LPPFKRLTKA EMARLSKSQK KQYLDEMEYR EKLFMKRQMK
0801: EERKRRKMMK KFAAEIKDMA EEHSENVEEE RSEPASVPVP MPDLSLPASF DSDNPTHRYR SLDSSNQWLV RPVLETQGWD HDVGYEGVNA ERLFVVKEKI
0901: PISFSGQVTK DKKDANVQLE MAGSVKHGEG RSTSLVEDKL IANKRFRMVM CGGAMTSRGD VAYGGSLEAQ LRDKDYPLGR FLSTLGLSVM DWHGDLAIGG
1001: NIQSQVPIGR SSNLIARANL NNRGAGQVSV RVNSSEQLQL AMVALVPLFK KLFSYYSPQQ MQY
0101: EKKLADDGNS DEQVEKIELV VSDVDARDTE DEEAIDSSKP ESLQPDDLPS EEVKDPKEVN GESHGEANLQ HITTGEAVPG FVTSRMNGDE GEAGAENVHE
0201: TATHSFSENG TVSLEKKQPV ADVIGETRNG GIEEEIKEEI VDVSGAQRNG ERASGERSFN DSIQVASAGT SSPLEKSSSE ENGETEGHIS REHDTVQNGG
0301: LGVEHTSQPN KEFEKQRGSR VNMSPEIKER KSEVASSVSP TESTSNIAAS PPPARPAGHG RDASLLEPTP RVPHQPRVNG NASQNQSEQA EDPTPAETDE
0401: HDETREKLQL IRVKFLRLSH RLGQTPHNVV VAQVLYRLGL AEQLRGRNGS RVGAFSFDRA SSMAEQLEAA GQDPLDFSCT VMVLGKSGVG KSATINSIFD
0501: EVKICTDAFQ MGTKRVQEVE GFVQGIKVRV IDTPGLLPSW SDQHKNEKML KSVKVFIKKN PPDIVLYLDR LDMQSRDSGD TPLLRTITDV FGPSIWFNAI
0601: VGLTHAASAP PDGPNGTASS YDMFVTQRSH VIQQAIRQAA GDMRLMNPVS LVENHSACRT NRAGQRVLPN GQVWKPHLLL LSFASKILAE ANALLKLQDN
0701: NTPGRPFVAR SKAPPLPLLL SSFLQSRPQA KLPEEQYGDE EDEDDLDESS GSDEESEYDQ LPPFKRLTKA EMARLSKSQK KQYLDEMEYR EKLFMKRQMK
0801: EERKRRKMMK KFAAEIKDMA EEHSENVEEE RSEPASVPVP MPDLSLPASF DSDNPTHRYR SLDSSNQWLV RPVLETQGWD HDVGYEGVNA ERLFVVKEKI
0901: PISFSGQVTK DKKDANVQLE MAGSVKHGEG RSTSLVEDKL IANKRFRMVM CGGAMTSRGD VAYGGSLEAQ LRDKDYPLGR FLSTLGLSVM DWHGDLAIGG
1001: NIQSQVPIGR SSNLIARANL NNRGAGQVSV RVNSSEQLQL AMVALVPLFK KLFSYYSPQQ MQY
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.