Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g076360.2.1 | |
| Solyc09g031780.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16620.1 | Solyc09g031780.2.1 | AT1G06950.1 | 15829604 |
| AT3G16620.1 | Solyc06g076360.2.1 | AT3G46740.1 | 15829604 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004034 | Potato | cytosol | 95.23 | 93.35 |
| Solyc11g043010.1.1 | Tomato | nucleus | 37.96 | 69.92 |
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 34.9 | 67.14 |
| CDX70657 | Canola | cytosol | 14.24 | 65.86 |
| CDY66172 | Canola | cytosol | 45.04 | 61.26 |
| CDX70659 | Canola | cytosol | 4.77 | 59.26 |
| CDX70551 | Canola | cytosol | 15.66 | 58.33 |
| AT3G16620.1 | Thale cress | cytosol | 46.83 | 57.67 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 53.99 | 56.78 |
| KRH24252 | Soybean | mitochondrion | 50.71 | 56.15 |
| CDY43117 | Canola | cytosol | 46.01 | 55.89 |
| Bra022170.1-P | Field mustard | nucleus | 43.62 | 55.03 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 43.55 | 54.94 |
| CDX78660 | Canola | cytosol | 26.99 | 54.6 |
| Bra006330.1-P | Field mustard | cytosol | 26.99 | 54.6 |
| AT2G16640.3 | Thale cress | cytosol | 48.25 | 53.65 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 39.97 | 53.17 |
| EER91974 | Sorghum | cytosol | 38.7 | 52.48 |
| Zm00001d029846_P001 | Maize | plastid | 39.0 | 52.46 |
| CDX92087 | Canola | cytosol | 45.94 | 52.12 |
| Zm00001d047130_P001 | Maize | cytosol | 39.0 | 51.12 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 39.67 | 49.81 |
| KRH29257 | Soybean | endoplasmic reticulum | 50.71 | 49.74 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 39.82 | 49.72 |
| CDX70550 | Canola | cytosol | 10.44 | 49.47 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 39.6 | 49.44 |
| CDX70641 | Canola | cytosol | 28.78 | 48.13 |
| CDX70658 | Canola | cytosol | 4.1 | 42.97 |
| Solyc07g007650.1.1 | Tomato | cytosol | 16.55 | 40.88 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 36.09 | 40.3 |
| GSMUA_Achr11P... | Banana | cytosol | 38.48 | 36.6 |
| Solyc03g095220.2.1 | Tomato | plastid | 6.11 | 31.66 |
| Solyc01g080780.2.1 | Tomato | nucleus | 25.43 | 30.94 |
| Solyc05g052160.2.1 | Tomato | plastid | 6.79 | 30.23 |
| Solyc09g074940.1.1 | Tomato | plastid | 30.43 | 29.08 |
Protein Annotations
| EnsemblPlants:Solyc01g111240.2.1 | EnsemblPlantsGene:Solyc01g111240.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005525 | InterPro:G_AIG1 | InterPro:IPR006703 | InterPro:P-loop_NTPase | InterPro:TOC159_MAD | PANTHER:PTHR10903 |
| PANTHER:PTHR10903:SF47 | PFAM:PF04548 | PFAM:PF11886 | PFscan:PS51720 | SEG:seg | SUPFAM:SSF52540 |
| UniParc:UPI0002767547 | UniProt:K4B3Y6 | MapMan:23.1.2.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:97556719..97561042
Molecular Weight (calculated)
147081.0 Da
IEP (calculated)
4.477
GRAVY (calculated)
-0.694
Length
1341 amino acids
Sequence
(BLAST)
(BLAST)
0001: MENGEERFGK ARMDDWNGVV DETVEVRPED KVVVVSHVSK ESEGDEVFEE AIEPESPGFA VEDVVASEGR NDDNSGDINS SIEDSSNSES RDNVENFEEA
0101: VEVLHEIQHA NDESNQKTDV ILKEEPSVEK ESCHEIAAPD ETEVVEKNIK VGKGKDDMSE VADLGAAIET ETSVNWDERK DNSGEPTEFE NGVFNHVNLG
0201: ETQSDDAKKT ISDQQDADEA KAGNNVLQNQ VHSYKDALLH DEDNVDVIET SAVQPAGHQD TADVHNNVSD SSGSVLKDEG DTEWEGVLKS LDSDVKDEEQ
0301: KDISPNDAST NGHHSESLNP SDELKEEAGP SPERINGYNM NEEQRDVERT VPSPELVNGS NKDEEQQIDG VKAVHSPEPV NGSNKDEEQQ IDGVKAISPE
0401: PVNGSNKVEG QQLDGEKAVC SPEPINCTNK DEQQIDDQDN DSVSILQGGH FPLKAEVTEK ESTGPELMGD ASDHQGLKLN ESPTMEPGNL NDRTNEQKDV
0501: SVSDSSASLN HSGISVRGKV TADDEMSKSS EALPSDNNEK VSKVSQDAVV GVDKVVEKES VDKVIEKEPV SVVVKDLKQS VPRVRESEAR SATEHPSSSN
0601: ASATRIPAPA GLGRAAPLLE PAPRVVQQPR VNGTASPVQN QLVEESTNGE ADEYDETREK LQMIRVKFLR LAHRNGQTPH NVVVAQVLYR LGLAEQLRGR
0701: SGGRVGAFSF DRASAMAEQL EAAGQEPLDF SCTIMVLGKT GVGKSATINS IFDEVKFDTD AFQVGTKKVQ DVVGTVQGIK VRVIDTPGLL PSWSDQRQNE
0801: KILHSVKRFI KKTPPDIVLY LDRLDMQSRD NGDMPLLRTI TEIFGPSIWF NAIVVLTHAA SAPPEGPNGT VTSYDMFVTQ RSHVVQQAIR QAAGDMRLMN
0901: PVSLVENHSA CRTNRAGQRV LPNGQVWRPH LLLLSFASKI LAEANTLLKL QDSSSRPQVK LPAEQFDDDD DALDDDLDES SESEDESEYD QLPPFKRLTK
1001: AQLAKLSKEQ KKAYNDELEY REKLFMKKQL KEERKRRKMM KKMQAAAESL PPTDPSENVD EETGGASSVP VPMPDLALPA SFDSDNPTHR YRYLDSSNQW
1101: LVRPVLEPNG WDHDVGYEGI NVERLFVVKD KIPISLSSQV SKDKKDTNLQ MEIASSVKHG HGKATSLGFD MQSVGKDLAY TLRSETRFCN YRKNKATAGL
1201: SVTLLGDVMT GGVKIEDRLT FNRRGSLVVS GGAMFGRGDA AYGGSLEATL RDKDHPLGRF LSTLGLSVMD WHGDLAIGCN SQTQIPIGRY TNLIGRVNIN
1301: NKGSGQVSIR LNSSEQLQIA LISLIPLVRK LISYSQPAQY G
0101: VEVLHEIQHA NDESNQKTDV ILKEEPSVEK ESCHEIAAPD ETEVVEKNIK VGKGKDDMSE VADLGAAIET ETSVNWDERK DNSGEPTEFE NGVFNHVNLG
0201: ETQSDDAKKT ISDQQDADEA KAGNNVLQNQ VHSYKDALLH DEDNVDVIET SAVQPAGHQD TADVHNNVSD SSGSVLKDEG DTEWEGVLKS LDSDVKDEEQ
0301: KDISPNDAST NGHHSESLNP SDELKEEAGP SPERINGYNM NEEQRDVERT VPSPELVNGS NKDEEQQIDG VKAVHSPEPV NGSNKDEEQQ IDGVKAISPE
0401: PVNGSNKVEG QQLDGEKAVC SPEPINCTNK DEQQIDDQDN DSVSILQGGH FPLKAEVTEK ESTGPELMGD ASDHQGLKLN ESPTMEPGNL NDRTNEQKDV
0501: SVSDSSASLN HSGISVRGKV TADDEMSKSS EALPSDNNEK VSKVSQDAVV GVDKVVEKES VDKVIEKEPV SVVVKDLKQS VPRVRESEAR SATEHPSSSN
0601: ASATRIPAPA GLGRAAPLLE PAPRVVQQPR VNGTASPVQN QLVEESTNGE ADEYDETREK LQMIRVKFLR LAHRNGQTPH NVVVAQVLYR LGLAEQLRGR
0701: SGGRVGAFSF DRASAMAEQL EAAGQEPLDF SCTIMVLGKT GVGKSATINS IFDEVKFDTD AFQVGTKKVQ DVVGTVQGIK VRVIDTPGLL PSWSDQRQNE
0801: KILHSVKRFI KKTPPDIVLY LDRLDMQSRD NGDMPLLRTI TEIFGPSIWF NAIVVLTHAA SAPPEGPNGT VTSYDMFVTQ RSHVVQQAIR QAAGDMRLMN
0901: PVSLVENHSA CRTNRAGQRV LPNGQVWRPH LLLLSFASKI LAEANTLLKL QDSSSRPQVK LPAEQFDDDD DALDDDLDES SESEDESEYD QLPPFKRLTK
1001: AQLAKLSKEQ KKAYNDELEY REKLFMKKQL KEERKRRKMM KKMQAAAESL PPTDPSENVD EETGGASSVP VPMPDLALPA SFDSDNPTHR YRYLDSSNQW
1101: LVRPVLEPNG WDHDVGYEGI NVERLFVVKD KIPISLSSQV SKDKKDTNLQ MEIASSVKHG HGKATSLGFD MQSVGKDLAY TLRSETRFCN YRKNKATAGL
1201: SVTLLGDVMT GGVKIEDRLT FNRRGSLVVS GGAMFGRGDA AYGGSLEATL RDKDHPLGRF LSTLGLSVMD WHGDLAIGCN SQTQIPIGRY TNLIGRVNIN
1301: NKGSGQVSIR LNSSEQLQIA LISLIPLVRK LISYSQPAQY G
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.