CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70551	Canola	cytosol	86.9	70.0
CDX97269	Canola	cytosol	10.69	46.97
CDX78660	Canola	cytosol	93.79	41.03
CDX70641	Canola	cytosol	90.69	32.79
CDY52130	Canola	cytosol, plastid	22.76	21.09
Solyc11g043010.1.1	Tomato	nucleus	52.76	21.02
CDY66172	Canola	cytosol	71.03	20.89
CDX98810	Canola	cytosol	22.41	20.77
CDX80936	Canola	cytosol	22.41	20.77
HORVU1Hr1G053280.1	Barley	mitochondrion	49.66	20.66
CDY55323	Canola	cytosol	21.03	20.54
CDX89987	Canola	cytosol	21.03	20.47
CDY15228	Canola	cytosol	21.03	20.47
CDY32453	Canola	cytosol	20.69	20.2
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	70.34	19.19
CDY50376	Canola	cytosol	45.17	18.79
CDY43117	Canola	cytosol	71.38	18.75
PGSC0003DMT400024781	Potato	cytosol	64.83	17.75
CDX92087	Canola	cytosol	70.34	17.26
AT2G16640.3	Thale cress	cytosol	69.66	16.75
Os10t0548800-01	Rice	cytosol, plasma membrane, plastid	57.93	16.67
EER91974	Sorghum	cytosol	56.55	16.58
Zm00001d029846_P001	Maize	plastid	55.52	16.15
Zm00001d047130_P001	Maize	cytosol	55.86	15.84
KRH24252	Soybean	mitochondrion	65.52	15.69
CDX91288	Canola	cytosol	42.07	15.52
VIT_03s0038g02070.t01	Wine grape	nucleus	67.59	15.37
TraesCS1B01G222000.1	Wheat	cytosol	56.55	15.27
TraesCS1A01G208000.1	Wheat	cytosol	55.86	15.17
TraesCS1D01G211300.1	Wheat	cytosol, golgi	55.86	15.08
Solyc01g111240.2.1	Tomato	nucleus	65.86	14.24
KRH29257	Soybean	endoplasmic reticulum	66.21	14.05
GSMUA_Achr8P19440_001	Banana	cytosol	57.93	13.99
PGSC0003DMT400004034	Potato	cytosol	65.86	13.96
CDY35813	Canola	cytosol	36.55	13.54
CDX92471	Canola	cytosol	36.55	13.54
GSMUA_Achr11P...	Banana	cytosol	56.21	11.56
CDX70178	Canola	cytosol	22.07	8.43
CDX70550	Canola	cytosol	6.55	6.71
CDY44175	Canola	cytosol	19.66	6.17
CDX97270	Canola	cytosol	8.62	5.69
CDY22896	Canola	cytosol	19.66	5.63
CDX70658	Canola	cytosol	2.41	5.47
CDX70659	Canola	cytosol	0.34	0.93
CDX98809	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70657	EnsemblPlantsGene:GSBRNA2T00140512001	Gene3D:3.40.50.300	GO:A0A078C1Q0	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:G_AIG1	InterPro:IPR006703	InterPro:P-loop_NTPase	PANTHER:PTHR10903
PANTHER:PTHR10903:SF47	PFAM:PF04548	PFscan:PS51720	ProteinID:CDX70657	ProteinID:CDX70657.1	SEG:seg
SUPFAM:SSF52540	UniParc:UPI0004EDB968	MapMan:35.1	:	:	:

Description

BnaC03g07410D

Coordinates

chrLK031791:+:1424016..1424981

Molecular Weight (calculated)

31803.5 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.216

Length

290 amino acids

Sequence
(BLAST)

001: MEEKKNADDR IINDNILIPP APPVLGLGRG APLLKPTPRR RVNGNVLSQH PTTTTAEIDE TRVKFLRLSH RLGQTPRNNV VVAQFLSRGS SRVGGAAISM
101: AEQLERQDHP LDFSCTIMLL GKTGVGKSAT INSIFDDDHE VKKMCTTDAF QMGTKRVQLV EGFVQGIKVR VIDTPGLSPS WLDTQTQSID DDMLLLRTIT
201: HVLGPSIWSN AIVGLTHAAS APPDGAASSY DMFVTRRCLA IQLDIRQAAR DLRLVNPVSL VENHPACRTN RAGHRVLPNG QAWKPHLLLL

Best Arabidopsis Sequence Match ( AT2G16640.1 )
(BLAST)

0001: MGDGTEFVVR SDREDKKLAE DRISDEQVVK NELVRSDEVR DDNEDEVFEE AIGSENDEQE EEEDPKRELF ESDDLPLVET LKSSMVEHEV EDFEEAVGDL
0101: DETSSNEGGV KDFTAVGESH GAGEAEFDVL ATKMNGDKGE GGGGGSYDKV ESSLDVVDTT ENATSTNTNG SNLAAEHVGI ENGKTHSFLG NGIASPKNKE
0201: VVAEVIPKDD GIEEPWNDGI EVDNWEERVD GIQTEQEVEE GEGTTENQFE KRTEEEVVEG EGTSKNLFEK QTEQDVVEGE GTSKDLFENG SVCMDSESEA
0301: ERNGETGAAY TSNIVTNASG DNEVSSAVTS SPLEESSSGE KGETEGDSTC LKPEQHLASS PHSYPESTEV HSNSGSPGVT SREHKPVQSA NGGHDVQSPQ
0401: PNKELEKQQS SRVHVDPEIT ENSHVETEPE VVSSVSPTES RSNPAALPPA RPAGLGRASP LLEPASRAPQ QSRVNGNGSH NQFQQAEDST TTEADEHDET
0501: REKLQLIRVK FLRLAHRLGQ TPHNVVVAQV LYRLGLAEQL RGRNGSRVGA FSFDRASAMA EQLEAAGQDP LDFSCTIMVL GKSGVGKSAT INSIFDEVKF
0601: CTDAFQMGTK RVQDVEGLVQ GIKVRVIDTP GLLPSWSDQA KNEKILNSVK AFIKKNPPDI VLYLDRLDMQ SRDSGDMPLL RTISDVFGPS IWFNAIVGLT
0701: HAASVPPDGP NGTASSYDMF VTQRSHVIQQ AIRQAAGDMR LMNPVSLVEN HSACRTNRAG QRVLPNGQVW KPHLLLLSFA SKILAEANAL LKLQDNIPGR
0801: PFAARSKAPP LPFLLSSLLQ SRPQPKLPEQ QYGDEEDEDD LEESSDSDEE SEYDQLPPFK SLTKAQMATL SKSQKKQYLD EMEYREKLLM KKQMKEERKR
0901: RKMFKKFAAE IKDLPDGYSE NVEEESGGPA SVPVPMPDLS LPASFDSDNP THRYRYLDSS NQWLVRPVLE THGWDHDIGY EGVNAERLFV VKEKIPISVS
1001: GQVTKDKKDA NVQLEMASSV KHGEGKSTSL GFDMQTVGKE LAYTLRSETR FNNFRRNKAA AGLSVTHLGD SVSAGLKVED KFIASKWFRI VMSGGAMTSR
1101: GDFAYGGTLE AQLRDKDYPL GRFLTTLGLS VMDWHGDLAI GGNIQSQVPI GRSSNLIARA NLNNRGAGQV SVRVNSSEQL QLAMVAIVPL FKKLLSYYYP
1201: QTQYGQ

Arabidopsis Description

TOC132Translocase of chloroplast 132, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.