Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr9P03850_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16620.1 | GSMUA_Achr11P... | AT1G06950.1 | 15829604 |
| AT3G16620.1 | GSMUA_Achr9P03850_001 | AT3G46740.1 | 15829604 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 35.89 | 61.84 |
| CDX70657 | Canola | cytosol | 13.99 | 57.93 |
| EER91974 | Sorghum | cytosol | 41.13 | 49.95 |
| Zm00001d029846_P001 | Maize | plastid | 41.05 | 49.45 |
| GSMUA_Achr11P... | Banana | cytosol | 57.87 | 49.29 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 41.3 | 49.21 |
| CDY66172 | Canola | cytosol | 39.97 | 48.68 |
| CDX70551 | Canola | cytosol | 14.57 | 48.61 |
| Zm00001d047130_P001 | Maize | cytosol | 40.97 | 48.09 |
| CDX70659 | Canola | cytosol | 4.25 | 47.22 |
| PGSC0003DMT400024781 | Potato | cytosol | 41.47 | 47.03 |
| Bra006330.1-P | Field mustard | cytosol | 25.4 | 46.0 |
| CDX78660 | Canola | cytosol | 25.4 | 46.0 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 40.47 | 45.25 |
| AT3G16620.1 | Thale cress | cytosol | 40.97 | 45.18 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 40.38 | 45.16 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 40.05 | 45.04 |
| CDY43117 | Canola | cytosol | 41.22 | 44.84 |
| CDX70550 | Canola | cytosol | 10.24 | 43.46 |
| Bra022170.1-P | Field mustard | nucleus | 38.22 | 43.18 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 38.22 | 43.18 |
| KRH24252 | Soybean | mitochondrion | 42.63 | 42.28 |
| Solyc11g043010.1.1 | Tomato | nucleus | 25.4 | 41.9 |
| CDX70641 | Canola | cytosol | 27.81 | 41.65 |
| AT2G16640.3 | Thale cress | cytosol | 41.38 | 41.21 |
| CDX92087 | Canola | cytosol | 40.55 | 41.2 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 43.3 | 40.78 |
| CDX70658 | Canola | cytosol | 4.33 | 40.62 |
| KRH29257 | Soybean | endoplasmic reticulum | 42.8 | 37.6 |
| PGSC0003DMT400004034 | Potato | cytosol | 41.63 | 36.55 |
| Solyc01g111240.2.1 | Tomato | nucleus | 40.3 | 36.09 |
| GSMUA_Achr1P22210_001 | Banana | cytosol | 4.16 | 35.97 |
| GSMUA_Achr9P31010_001 | Banana | cytosol | 29.14 | 35.39 |
| GSMUA_Achr1P09910_001 | Banana | mitochondrion | 21.07 | 33.38 |
| GSMUA_Achr9P31000_001 | Banana | cytosol | 29.06 | 31.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.91 | 30.45 |
| GSMUA_Achr6P20360_001 | Banana | cytosol | 24.06 | 25.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P19440_001 | EnsemblPlants:GSMUA_Achr8T19440_001 | EnsemblPlantsGene:GSMUA_Achr8G19440_001 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005525 | InterPro:G_AIG1 | InterPro:IPR006703 | InterPro:P-loop_NTPase | InterPro:TOC159_MAD |
| PANTHER:PTHR10903 | PANTHER:PTHR10903:SF47 | PFAM:PF04548 | PFAM:PF11886 | PFscan:PS51720 | SEG:seg |
| SUPFAM:SSF52540 | UniParc:UPI0002961FAD | UniProt:M0TRU7 | MapMan:23.1.2.2 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G19440_001]
Coordinates
chr8:-:24707831..24712661
Molecular Weight (calculated)
129649.0 Da
IEP (calculated)
5.556
GRAVY (calculated)
-0.374
Length
1201 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSIQSNYPIS SSEAAGGMGE VTNGSSFIVD DKELTVGDGI KEFAGNKFKF EEIERMKLDR PDGLPHEGPE NGESLEVTSD ECGKNNDTES NEQFVHQNGR
0101: QQMDITAQSV AVSEEPVKFQ QLKENSAEPD DGFAPRNGHA SVKKEDGGVA TNGHAILEKD GSSCSHVPNT ANGPLKEDKA DIHVTTKKLQ IESVEILSCS
0201: SSIIDDNKKN ASPSPSPTPS IPNPENLGHP GFLSRPAGLG SSVPLLEPSG RSLQQPKANG SAPWRLSQPS EEPPADDGEV NDETHEKLQM IRVKFLRLAH
0301: RLGQTPHNVV VAQVLYRLGL AEQLKRNTNR PGVFSFDRAS VMAEQLEAAG RETLDFSCTI MVIGKTGVGK SATINSIVDE IKLPTDAFQM GTKKVQEVVG
0401: TVQGIKVRII DTPGLVSSCS DQHRNEKVLH SVKRFINKTP PDIVLYFDRL DMQSRDYGDG PLLRTITSIF GASIWFNAIV ILTHAASAPP EGPNGSPLSY
0501: ETFVSQRSHV VQQAIRQAAG DVRLMNPVSL VENHSACRMN RAGQRVLPNG QVWKPQFPPG KLFGSRPRVP PLPFLLSSLL QSRPQLKLPG EQFGDDDNLD
0601: EDVDGTSDSD EGGHSNGDME EETSGPASVP VPMPDYVLPN SFDSDNPTHR YRFLDSSNQW LVRPVLDSLG WDHDIGYEGL NVERVFVIKD KIPMSVSGQL
0701: TKDKKECSLQ TEVASSIKHS ESKATSLCLD MQTVGKDIAY TLRGETSFRN IRRNNTAAGV SVTVLGDSVS AGLKFEDKLM ISKRFRVLLT GGAMAGRGDV
0801: AYGGRLEATL RDKDYPIGRA LSTLALSIVD WHGDLQLGCN LQSQLPLGRG TNVIGHANLS NKGTSQFGIR LNSSEHLQIA LLAFVPILRN VNKILFVVRP
0901: NTTNASNPII EPLASHLILL PMPLNLSLHR PTPSQLTFTA LQPSEPAAMD SRTSLLPLFL ASLLLLLPPP ARATIVPGSI ERTTKQQILA SIPPHAAEAS
1001: VPFLTSPSGK YTASLVRRQT APGAGGLGND FCYIQVQDTG AERSMWESDN PVWDTGAQSA DNNFLETLEL VDQGDMRIRD KDGELAWKAS DDPRANQNCG
1101: LPGSPGMAPA APPFAVPIGG DNQNLPFGQP ATSVQQQLLP PQSNTMYDQV QPQHPFGGAS QAFGFNGHPL VDNTPYDSGC SGGGAGRWIG FGVALLLAIL
1201: A
0101: QQMDITAQSV AVSEEPVKFQ QLKENSAEPD DGFAPRNGHA SVKKEDGGVA TNGHAILEKD GSSCSHVPNT ANGPLKEDKA DIHVTTKKLQ IESVEILSCS
0201: SSIIDDNKKN ASPSPSPTPS IPNPENLGHP GFLSRPAGLG SSVPLLEPSG RSLQQPKANG SAPWRLSQPS EEPPADDGEV NDETHEKLQM IRVKFLRLAH
0301: RLGQTPHNVV VAQVLYRLGL AEQLKRNTNR PGVFSFDRAS VMAEQLEAAG RETLDFSCTI MVIGKTGVGK SATINSIVDE IKLPTDAFQM GTKKVQEVVG
0401: TVQGIKVRII DTPGLVSSCS DQHRNEKVLH SVKRFINKTP PDIVLYFDRL DMQSRDYGDG PLLRTITSIF GASIWFNAIV ILTHAASAPP EGPNGSPLSY
0501: ETFVSQRSHV VQQAIRQAAG DVRLMNPVSL VENHSACRMN RAGQRVLPNG QVWKPQFPPG KLFGSRPRVP PLPFLLSSLL QSRPQLKLPG EQFGDDDNLD
0601: EDVDGTSDSD EGGHSNGDME EETSGPASVP VPMPDYVLPN SFDSDNPTHR YRFLDSSNQW LVRPVLDSLG WDHDIGYEGL NVERVFVIKD KIPMSVSGQL
0701: TKDKKECSLQ TEVASSIKHS ESKATSLCLD MQTVGKDIAY TLRGETSFRN IRRNNTAAGV SVTVLGDSVS AGLKFEDKLM ISKRFRVLLT GGAMAGRGDV
0801: AYGGRLEATL RDKDYPIGRA LSTLALSIVD WHGDLQLGCN LQSQLPLGRG TNVIGHANLS NKGTSQFGIR LNSSEHLQIA LLAFVPILRN VNKILFVVRP
0901: NTTNASNPII EPLASHLILL PMPLNLSLHR PTPSQLTFTA LQPSEPAAMD SRTSLLPLFL ASLLLLLPPP ARATIVPGSI ERTTKQQILA SIPPHAAEAS
1001: VPFLTSPSGK YTASLVRRQT APGAGGLGND FCYIQVQDTG AERSMWESDN PVWDTGAQSA DNNFLETLEL VDQGDMRIRD KDGELAWKAS DDPRANQNCG
1101: LPGSPGMAPA APPFAVPIGG DNQNLPFGQP ATSVQQQLLP PQSNTMYDQV QPQHPFGGAS QAFGFNGHPL VDNTPYDSGC SGGGAGRWIG FGVALLLAIL
1201: A
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.