CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70550	Canola	cytosol	62.5	28.27
CDX78660	Canola	cytosol	71.09	13.73
CDX70641	Canola	cytosol	63.28	10.1
CDX97270	Canola	cytosol	21.88	6.38
HORVU1Hr1G053280.1	Barley	mitochondrion	34.38	6.31
CDY66172	Canola	cytosol	48.44	6.29
CDY43117	Canola	cytosol	50.0	5.8
CDX92087	Canola	cytosol	49.22	5.33
CDY50376	Canola	cytosol	28.91	5.31
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	43.75	5.27
AT2G16640.3	Thale cress	cytosol	49.22	5.22
PGSC0003DMT400024781	Potato	cytosol	40.62	4.91
Os10t0548800-01	Rice	cytosol, plasma membrane, plastid	38.28	4.86
EER91974	Sorghum	cytosol	37.5	4.85
Zm00001d029846_P001	Maize	plastid	36.72	4.71
Solyc11g043010.1.1	Tomato	nucleus	26.56	4.67
KRH24252	Soybean	mitochondrion	43.75	4.62
CDX97269	Canola	cytosol	2.34	4.55
VIT_03s0038g02070.t01	Wine grape	nucleus	44.53	4.47
TraesCS1A01G208000.1	Wheat	cytosol	36.72	4.4
Zm00001d047130_P001	Maize	cytosol	35.16	4.4
TraesCS1D01G211300.1	Wheat	cytosol, golgi	36.72	4.38
GSMUA_Achr8P19440_001	Banana	cytosol	40.62	4.33
CDX91288	Canola	cytosol	26.56	4.33
TraesCS1B01G222000.1	Wheat	cytosol	35.94	4.28
CDY35813	Canola	cytosol	25.78	4.21
KRH29257	Soybean	endoplasmic reticulum	44.53	4.17
Solyc01g111240.2.1	Tomato	nucleus	42.97	4.1
CDX92471	Canola	cytosol	25.0	4.09
PGSC0003DMT400004034	Potato	cytosol	42.97	4.02
CDY52130	Canola	cytosol, plastid	9.38	3.83
CDX98810	Canola	cytosol	9.38	3.83
GSMUA_Achr11P...	Banana	cytosol	39.84	3.62
CDX80936	Canola	cytosol	8.59	3.51
CDY32453	Canola	cytosol	7.81	3.37
CDX89987	Canola	cytosol	7.81	3.36
CDY15228	Canola	cytosol	7.81	3.36
CDY55323	Canola	cytosol	7.03	3.03
CDX70657	Canola	cytosol	5.47	2.41
CDX70551	Canola	cytosol	6.25	2.22
CDX70659	Canola	cytosol	1.56	1.85
CDY22896	Canola	cytosol	14.06	1.78
CDY44175	Canola	cytosol	11.72	1.62
CDX70178	Canola	cytosol	9.38	1.58
CDX98809	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70658	EnsemblPlantsGene:GSBRNA2T00140513001	InterPro:TOC159_MAD	PANTHER:PTHR10903	PANTHER:PTHR10903:SF47	PFAM:PF11886
ProteinID:CDX70658	ProteinID:CDX70658.1	SEG:seg	UniParc:UPI0004EE9CC8	MapMan:35.2	:

Description

BnaC03g07420D

Coordinates

chrLK031791:+:1425209..1425595

Molecular Weight (calculated)

14421.4 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.512

Length

128 amino acids

Sequence
(BLAST)

001: MEEENERRRP HITLPPTMPV PILIWYDTNN HPVRTHPPIE LSNPLLRVNP VLVVPGWDHD IGYDGLSAKG TLVKEKIHMS YSGKVTENNL MKMKGADVQL
101: EMASLVVHGE EGNRSTSLGF EMQKKDLG

Best Arabidopsis Sequence Match ( AT3G16620.1 )
(BLAST)

0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH

Arabidopsis Description

TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.