CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73342
CDX86508
CDX89987
CDX90725
CDX94311
CDY05064
CDY06840
CDY10236
CDY15228
CDY15593
CDY25541
CDY32453
CDY34384
CDY37101
CDY54889
CDY55323

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02280.1	CDX89987	AT1G02280.1	12869544
AT1G02280.1	CDY15228	AT1G02280.1	12869544
AT1G02280.1	CDY32453	AT1G02280.1	12869544
AT1G02280.1	CDY55323	AT1G02280.1	12869544
AT1G02280.1	CDX86508	AT1G06950.1	15829604
AT1G02280.1	CDX94311	AT1G06950.1	15829604
AT1G02280.1	CDY06840	AT1G06950.1	15829604
AT1G02280.1	CDY10236	AT1G06950.1	15829604
AT1G02280.1	CDY15593	AT1G06950.1	15829604
AT1G02280.1	CDY54889	AT1G06950.1	15829604
AT1G02280.1	CDX73342	AT1G35670.1	19130088
AT1G02280.1	CDY37101	AT1G35670.1	19130088
AT1G02280.1	CDY25541	AT1G63900.1	23118188
AT1G02280.1	CDY34384	AT1G63900.1	23118188
AT1G02280.1	CDX90725	AT4G09570.1	19130088
AT1G02280.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32453	Canola	cytosol	97.98	97.98
CDX89987	Canola	cytosol	97.64	97.32
CDY15228	Canola	cytosol	96.63	96.31
AT1G02280.1	Thale cress	cytosol	94.28	94.28
GSMUA_Achr1P22210_001	Banana	cytosol	30.3	64.75
CDX98810	Canola	cytosol	63.3	60.06
GSMUA_AchrUn_...	Banana	cytosol	62.29	59.29
CDX80936	Canola	cytosol	62.29	59.11
CDY52130	Canola	cytosol, plastid	61.95	58.79
TraesCS4A01G072800.1	Wheat	golgi, plastid	59.26	53.99
TraesCS4B01G228900.1	Wheat	cytosol	59.26	53.99
TraesCS4D01G230000.1	Wheat	cytosol	58.92	53.68
Os03t0240500-01	Rice	plastid	58.25	52.91
KXG39799	Sorghum	cytosol	56.9	51.84
Zm00001d028373_P002	Maize	cytosol	56.23	50.0
HORVU4Hr1G064110.2	Barley	cytosol	58.59	48.88
Zm00001d047965_P002	Maize	cytosol	55.22	46.33
CDX97269	Canola	cytosol	8.42	37.88
CDX70178	Canola	cytosol	63.64	24.9
CDX70657	Canola	cytosol	20.54	21.03
CDX70551	Canola	cytosol	20.2	16.67
CDY50376	Canola	cytosol	26.6	11.33
CDX78660	Canola	cytosol	24.92	11.16
CDX91288	Canola	cytosol	28.96	10.94
CDX92471	Canola	cytosol	24.92	9.45
CDY35813	Canola	cytosol	24.92	9.45
CDY66172	Canola	cytosol	28.28	8.52
CDX70641	Canola	cytosol	22.9	8.48
CDX92086	Canola	cytosol, endoplasmic reticulum, vacuole	28.62	8.0
CDY43117	Canola	cytosol	28.28	7.61
CDX70658	Canola	cytosol	3.03	7.03
CDX92087	Canola	cytosol	27.95	7.02
CDX97270	Canola	cytosol	7.74	5.24
CDY44175	Canola	cytosol	15.15	4.87
CDY22896	Canola	cytosol	14.81	4.34
CDX70550	Canola	cytosol	2.69	2.83
CDX70659	Canola	cytosol	0.34	0.93
CDX98809	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	GO:A0A078IV43	UniProt:A0A078IV43	unigene:Bna.2284	EnsemblPlants:CDY55323
ProteinID:CDY55323	ProteinID:CDY55323.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536
GO:GO:0009707	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0046872	GO:GO:0071806	EnsemblPlantsGene:GSBRNA2T00016674001	InterPro:G_AIG1	InterPro:IPR006703	InterPro:P-loop_NTPase
PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	SUPFAM:SSF52540
TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI0004EF4CF1	SEG:seg	:	:

Description

BnaC08g49740DTranslocase of chloroplast [Source:UniProtKB/TrEMBL;Acc:A0A078IV43]

Coordinates

chrLK033393:+:26255..28197

Molecular Weight (calculated)

32891.0 Da

IEP (calculated)

9.422

GRAVY (calculated)

-0.128

Length

297 amino acids

Sequence
(BLAST)

001: MGSIVREWVG FQQFPAATQE KLIEFFAKLK QKDMNSLTVV VMGKGGVGKS STVNSLIGEQ VVRVSPFQAE GLRPVMVSRT MGGFTINIID TPGLVEAGYV
101: NHQALELIKG FLVNRTIDVL LYVDRLDVYR VDELDKQVVQ AITQTFGKEI WCKTLLVLTH AQFSPPDDLS YETFSSKRSD SLLKTIRAGS KMGKQQFEDS
201: AIEVVYAENS GRCSKNDKEE KALPNGEAWI PNLVKAITDV ATNQKKAIHV DKKMVDGSYS DDKGKKLIPL IIAAQYFVVK MIQGAIRSDI KISGKPL

Best Arabidopsis Sequence Match ( AT1G02280.2 )
(BLAST)

001: MGSLVREWVG FQQFPAATQE KLIEFFGKLK QKDMNSMTVL VLGKGGVGKS STVNSLIGEQ VVRVSPFQAE GLRPVMVSRT MGGFTINIID TPGLVEAGYV
101: NHQALELIKG FLVNRTIDVL LYVDRLDVYR VDELDKQVVI AITQTFGKEI WCKTLLVLTH AQFSPPDELS YETFSSKRSD SLLKTIRAGS KMRKQEFEDS
201: AIAVVYAENS GRCSKNDKDE KALPNGEAWI PNLVKAITDV ATNQRKAIHV DKKMVDGSYS DDKGKKLIPL IIGAQYLIVK MIQGAIRNDI KTSGKPL

Arabidopsis Description

TOC33Translocase of chloroplast 33, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23680]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.