Factsheet for Zm00001d028373_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004430_P001
Zm00001d004812_P002
Zm00001d007060_P003
Zm00001d023560_P002
Zm00001d028373_P002
Zm00001d032615_P002
Zm00001d047965_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02280.1	Zm00001d028373_P002	AT1G02280.1	12869544
AT1G02280.1	Zm00001d047965_P002	AT1G02280.1	12869544
AT1G02280.1	Zm00001d004430_P001	AT1G06950.1	15829604
AT1G02280.1	Zm00001d032615_P002	AT1G06950.1	15829604
AT1G02280.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT1G02280.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT1G02280.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT1G02280.1	Zm00001d007060_P003	AT1G63900.1	23118188
AT1G02280.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT1G02280.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT1G02280.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39799	Sorghum	cytosol	93.71	96.01
Os03t0240500-01	Rice	plastid	86.83	88.69
TraesCS4B01G228900.1	Wheat	cytosol	85.63	87.73
TraesCS4A01G072800.1	Wheat	golgi, plastid	85.63	87.73
TraesCS4D01G230000.1	Wheat	cytosol	85.33	87.42
Zm00001d047965_P002	Maize	cytosol	92.52	87.29
HORVU4Hr1G064110.2	Barley	cytosol	85.03	79.78
GSMUA_Achr1P22210_001	Banana	cytosol	31.14	74.82
PGSC0003DMT400013477	Potato	cytosol	61.08	67.77
VIT_02s0109g00360.t01	Wine grape	cytosol	62.87	67.74
VIT_16s0039g02670.t01	Wine grape	cytosol	61.68	66.88
PGSC0003DMT400030414	Potato	cytosol, plastid	58.68	65.12
Solyc03g095220.2.1	Tomato	plastid	50.0	64.48
Solyc05g052160.2.1	Tomato	plastid	57.48	63.79
KRG94982	Soybean	cytosol	58.38	62.5
AT5G05000.3	Thale cress	cytosol	58.08	61.98
CDX98810	Canola	cytosol	57.48	61.34
CDY52130	Canola	cytosol, plastid	57.19	61.02
KRH64901	Soybean	cytosol	57.19	61.02
CDX80936	Canola	cytosol	56.29	60.06
CDY55323	Canola	cytosol	50.0	56.23
CDX89987	Canola	cytosol	50.0	56.04
Bra033311.1-P	Field mustard	cytosol	50.0	56.04
AT1G02280.1	Thale cress	cytosol	49.7	55.89
Bra032612.1-P	Field mustard	cytosol	49.4	55.56
CDY32453	Canola	cytosol	49.4	55.56
CDY15228	Canola	cytosol	49.4	55.37
CDX70178	Canola	cytosol	57.78	25.43
Bra009405.1-P	Field mustard	cytosol	54.79	24.56
Zm00001d035254_P001	Maize	plastid	23.95	10.2
Zm00001d047130_P001	Maize	cytosol	28.44	9.29
Zm00001d029846_P001	Maize	plastid	27.54	9.23
Zm00001d010852_P002	Maize	plastid	29.34	8.12
Zm00001d034755_P001	Maize	cytosol	27.25	7.89
Zm00001d012893_P002	Maize	cytosol, plastid	26.65	7.82
Zm00001d035812_P003	Maize	plastid	28.74	7.38
CDX98809	Canola	cytosol	0.9	0.67

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	EntrezGene:542012	UniProt:A0A1D6JVK1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009507
GO:GO:0009527	GO:GO:0009536	GO:GO:0009707	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1	InterPro:IPR006703
ProteinID:ONL95824.1	InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720	PANTHER:PTHR10903
PANTHER:PTHR10903:SF43	SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34	UniParc:UPI00084474BE	EnsemblPlantsGene:Zm00001d028373
EnsemblPlants:Zm00001d028373_P002	EnsemblPlants:Zm00001d028373_T002	SEG:seg	:	:	:

Description

translocon of outer membrane of chloroplast35 translocon of outer membrane of chloroplast35

Coordinates

chr1:-:32472096..32478283

Molecular Weight (calculated)

37459.1 Da

IEP (calculated)

8.927

GRAVY (calculated)

-0.284

Length

334 amino acids

Sequence
(BLAST)

001: MASPIPREWV GLQQFPAATQ TKLHELLGKL KEEDVSTLTI LVMGKGGVGK SSTVNSIVGE RVASVSAFQS EGLRPMMCSR TRAGFTLNII DTPGLIEGGY
101: INEQAVDIIK RFLLGKTIDV LLYVDRLDAY RMDTLDEQVI RAITNSFGKD IWRRSLVVLT HAQLSPPDGI DYNDFFTRRS EALLRYIHSG AGINKREYGF
201: SEKYYQEDFP LPIALVENSG RCKTNEHGEK ILPDGTLWVP NLMKEITVVI SNGSSPTHVD QKLIDGPNPN NRRKLFIPLI LAVEYFLVVK GIRRAIHADI
301: ANGKVDDWEQ RYRDLVGSRD LVEQKGSTSR NRKA

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.