CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99814
EES09373
EES16732
KXG39799
OQU91582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02280.1	KXG39799	AT1G02280.1	12869544
AT1G02280.1	OQU91582	AT1G06950.1	15829604
AT1G02280.1	EES09373	AT1G35670.1	19130088
AT1G02280.1	EES16732	AT1G35670.1	19130088
AT1G02280.1	EER99814	AT1G63900.1	23118188
AT1G02280.1	EES09373	AT4G09570.1	19130088
AT1G02280.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028373_P002	Maize	cytosol	96.01	93.71
Os03t0240500-01	Rice	plastid	90.49	90.21
TraesCS4B01G228900.1	Wheat	cytosol	88.65	88.65
TraesCS4A01G072800.1	Wheat	golgi, plastid	88.65	88.65
TraesCS4D01G230000.1	Wheat	cytosol	88.34	88.34
Zm00001d047965_P002	Maize	cytosol	95.09	87.57
HORVU4Hr1G064110.2	Barley	cytosol	87.73	80.34
GSMUA_Achr1P22210_001	Banana	cytosol	31.9	74.82
PGSC0003DMT400013477	Potato	cytosol	63.8	69.1
VIT_02s0109g00360.t01	Wine grape	cytosol	65.03	68.39
VIT_16s0039g02670.t01	Wine grape	cytosol	64.42	68.18
Solyc03g095220.2.1	Tomato	plastid	52.15	65.64
PGSC0003DMT400030414	Potato	cytosol, plastid	60.43	65.45
Solyc05g052160.2.1	Tomato	plastid	59.2	64.12
KRG94982	Soybean	cytosol	60.12	62.82
AT5G05000.3	Thale cress	cytosol	60.12	62.62
CDX98810	Canola	cytosol	59.82	62.3
CDY52130	Canola	cytosol, plastid	59.82	62.3
KRH64901	Soybean	cytosol	58.9	61.34
CDX80936	Canola	cytosol	58.9	61.34
CDY55323	Canola	cytosol	51.84	56.9
CDX89987	Canola	cytosol	51.84	56.71
Bra033311.1-P	Field mustard	cytosol	51.84	56.71
AT1G02280.1	Thale cress	cytosol	51.53	56.57
Bra032612.1-P	Field mustard	cytosol	51.23	56.23
CDY32453	Canola	cytosol	51.23	56.23
CDY15228	Canola	cytosol	51.23	56.04
CDX70178	Canola	cytosol	60.12	25.82
Bra009405.1-P	Field mustard	cytosol	57.06	24.97
EES15811	Sorghum	mitochondrion	24.85	10.31
EER91974	Sorghum	cytosol	28.83	9.5
OQU90674	Sorghum	nucleus	26.69	9.4
OQU77419	Sorghum	nucleus	30.37	7.42
CDX98809	Canola	cytosol	0.92	0.67

Protein Annotations

MapMan:23.1.2.3	Gene3D:3.40.50.300	UniProt:A0A1B6QPF0	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009507	GO:GO:0009527
GO:GO:0009536	GO:GO:0009707	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0046872	GO:GO:0071806	InterPro:G_AIG1	InterPro:IPR006703	EnsemblPlants:KXG39799
ProteinID:KXG39799	ProteinID:KXG39799.1	InterPro:P-loop_NTPase	PFAM:PF04548	PIRSF:PIRSF038134	PFscan:PS51720
PANTHER:PTHR10903	PANTHER:PTHR10903:SF43	EnsemblPlantsGene:SORBI_3001G441200	SUPFAM:SSF52540	TIGRFAMs:TIGR00991	InterPro:Toc34
UniParc:UPI0001FCC8AC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71905919..71910556

Molecular Weight (calculated)

36417.9 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.283

Length

326 amino acids

Sequence
(BLAST)

001: MASPIPREWA GLQQFPAATQ TKLHELLGKL KEEDVSTLTI LVMGKGGVGK SSTVNSIVGE RVTTVSAFQS EGLRPTMCSR TRAGFTLNII DTPGLIEGGY
101: INEQAVDIIK RFLLGKTIDV LLYVDRLDAY RMDTLDEQVI RAITNSFGKD IWRRSLVVLT HAQLSPPDGI DYNDFFTRRS EALLRYIRSG AGINKREYGD
201: FPLPIALVEN SGRCKANEHG EKILPDGTPW VPNLMKEITV VISNGSKSIH VDQKLIDGPN PNNRWKMFIP LILAVEYFLV VKGIRRAIHA DIANGKVDDW
301: EQRYRDLVGS RDPVEQKGST SRNRKA

Best Arabidopsis Sequence Match ( AT5G05000.1 )
(BLAST)

001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS

Arabidopsis Description

TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.