CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035254_P001	Maize	plastid	91.98	92.22
TraesCS5D01G120200.1	Wheat	mitochondrion	77.35	77.45
TraesCS5A01G112900.1	Wheat	mitochondrion	76.97	77.17
TraesCS5B01G109100.1	Wheat	mitochondrion	76.97	76.97
Os12t0197400-01	Rice	mitochondrion	76.72	76.62
HORVU5Hr1G031380.1	Barley	mitochondrion	76.34	76.05
GSMUA_Achr1P09910_001	Banana	mitochondrion	50.64	52.51
VIT_11s0118g00260.t01	Wine grape	cytosol, mitochondrion, plastid	50.76	50.0
Solyc07g007650.1.1	Tomato	cytosol	34.22	49.54
KRH20190	Soybean	cytosol	46.69	46.16
KRH03616	Soybean	mitochondrion	46.69	46.11
PGSC0003DMT400078922	Potato	endoplasmic reticulum	48.47	45.52
CDX92471	Canola	cytosol	44.53	44.7
Bra002291.1-P	Field mustard	cytosol	44.4	44.57
CDY35813	Canola	cytosol	44.4	44.57
AT5G20300.4	Thale cress	cytosol	43.51	43.13
EER91974	Sorghum	cytosol	36.77	29.22
OQU90674	Sorghum	nucleus	32.7	27.75
KXG39799	Sorghum	cytosol	10.31	24.85
OQU77419	Sorghum	nucleus	38.17	22.47

Protein Annotations

MapMan:23.1.2.2	Gene3D:3.40.50.300	EntrezGene:8084784	UniProt:C5YTI0	EnsemblPlants:EES15811	ProteinID:EES15811
ProteinID:EES15811.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787
GO:GO:0016817	GO:GO:0045036	InterPro:G_AIG1	InterPro:IPR006703	InterPro:P-loop_NTPase	PFAM:PF04548
PFAM:PF11886	PFscan:PS51720	PANTHER:PTHR10903	PANTHER:PTHR10903:SF68	EnsemblPlantsGene:SORBI_3008G070500	SUPFAM:SSF52540
unigene:Sbi.19000	TIGRFAMs:TIGR00993	InterPro:TOC159_MAD	InterPro:Toc86_159	UniParc:UPI0001A8805E	RefSeq:XP_002441973.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:9193983..9197821

Molecular Weight (calculated)

87269.5 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.398

Length

786 amino acids

Sequence
(BLAST)

001: MLMNFRDWIS YRLGSSLLSA RPFALSPGAD DAVASEGDAH GTTHNDYVDT VTASPFSSND TRVSDVTTNS NGGAIYSGTV QQDDDNKKSD PLMKVEALQI
101: KFLRLVYRTG VSPSADVVAQ VLYRLQLANL IKAGESVARR PNLAINKARV IAAQQEAPGG PDLDVSLRIL LLGKTGVGKS AMINSIFDER KVATDALVPA
201: THRIKKIEGT IKGIRVTVID TPGLMPHYHG ERRNRKILSS VKRFIKRSPP DIVLYFERLD HINSRYNDYP LLKLMTDILG SSMWFDTVLV MTHCSSSPPE
301: GPDGYPLEYD NYTRYCKNVV QRHIQAAVSN MQLDNPFVLT DNHPMCRRNT KGERVLPNGQ VWVSELLLLC GATKLLTEAN SLLKFQDSFL LSQANTRLPS
401: LPHLLSSLLK PHSSSSSDAI DSEFTEMSDE EDEYDQLPPF RILKKSEYEN LTNEQKSAYL DELDYRETLY LKKQWKEGIR KQKLTEAQND EVGDDYEESA
501: SPEVVHMSDM DIPLCFDSDY PVHRYRHIIT DDQLFRPVLD PQGWDHDIGF DAINFEASKE LKKNVSGAIT GQMRKDKEDM YIHSECSVSY NAHRGCSLMG
601: GMDMQMASRD LVCTVHGDAQ FRNLPWNTTG GGISVTKFGN KYFAGAKLED SVTIGKRVKL VANAGRMAGC GQVAHGGGVQ ITARGKDYPV REESVTAAVS
701: ALSFEKETVI GANLQSDFRV GRGSKISVSA NLNSRNLGKL SVRTSTSDHA EIALIAVVSL IQFILRRRSA AADKGEQEID DTYLDD

Best Arabidopsis Sequence Match ( AT5G20300.2 )
(BLAST)

001: MKGFKDWVFA LSNSMASSRP LLGSDPFFRD PHQEQDNHSQ APAAPQPVTL SEPPCSTSSD LEILPPLSQQ QVPLESLYQS SIDLNGKKHN PLAKIGGLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS

Arabidopsis Description

TOC90Translocase of chloroplast 90, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6S5G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.