Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92471 | Canola | cytosol | 81.97 | 83.01 |
| Bra002291.1-P | Field mustard | cytosol | 81.84 | 82.89 |
| CDY35813 | Canola | cytosol | 81.46 | 82.5 |
| VIT_11s0118g00260.t01 | Wine grape | cytosol, mitochondrion, plastid | 56.12 | 55.76 |
| Solyc07g007650.1.1 | Tomato | cytosol | 36.82 | 53.78 |
| KRH03616 | Soybean | mitochondrion | 52.33 | 52.14 |
| KRH20190 | Soybean | cytosol | 51.95 | 51.82 |
| PGSC0003DMT400078922 | Potato | endoplasmic reticulum | 53.34 | 50.54 |
| GSMUA_Achr1P09910_001 | Banana | mitochondrion | 45.15 | 47.23 |
| Os12t0197400-01 | Rice | mitochondrion | 43.88 | 44.22 |
| EES15811 | Sorghum | mitochondrion | 43.13 | 43.51 |
| TraesCS5A01G112900.1 | Wheat | mitochondrion | 42.88 | 43.37 |
| HORVU5Hr1G031380.1 | Barley | mitochondrion | 43.13 | 43.35 |
| TraesCS5D01G120200.1 | Wheat | mitochondrion | 42.88 | 43.31 |
| TraesCS5B01G109100.1 | Wheat | mitochondrion | 42.62 | 43.0 |
| Zm00001d035254_P001 | Maize | plastid | 42.5 | 42.98 |
| AT5G05000.3 | Thale cress | cytosol | 10.34 | 26.2 |
| AT1G02280.1 | Thale cress | cytosol | 9.71 | 25.93 |
| AT3G16620.1 | Thale cress | cytosol | 35.18 | 25.62 |
| AT2G16640.3 | Thale cress | cytosol | 35.44 | 23.3 |
| AT4G02510.4 | Thale cress | nucleus | 35.56 | 18.76 |
| AT4G15810.1 | Thale cress | cytosol | 12.61 | 10.89 |
Protein Annotations
| MapMan:23.1.2.2 | Gene3D:3.40.50.300 | EntrezGene:832152 | ProteinID:AED92826.1 | ProteinID:AED92827.1 | EMBL:AF296825 |
| ProteinID:ANM68175.1 | ProteinID:ANM68176.1 | ArrayExpress:AT5G20300 | EnsemblPlantsGene:AT5G20300 | RefSeq:AT5G20300 | TAIR:AT5G20300 |
| RefSeq:AT5G20300-TAIR-G | EnsemblPlants:AT5G20300.4 | EMBL:AY465351 | Unigene:At.43458 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009527 |
| GO:GO:0009536 | GO:GO:0009707 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0045036 | GO:GO:0046872 | InterPro:G_AIG1 | InterPro:IPR006703 | RefSeq:NP_001031911.1 | RefSeq:NP_001318609.1 |
| RefSeq:NP_001329949.1 | RefSeq:NP_197530.2 | InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 | PFscan:PS51720 |
| PANTHER:PTHR10903 | PANTHER:PTHR10903:SF68 | UniProt:Q6S5G3 | SUPFAM:SSF52540 | InterPro:TOC159_MAD | UniParc:UPI0000196E10 |
| SEG:seg | : | : | : | : | : |
Description
TOC90Translocase of chloroplast 90, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6S5G3]
Coordinates
chr5:-:6853310..6856952
Molecular Weight (calculated)
89334.6 Da
IEP (calculated)
8.245
GRAVY (calculated)
-0.462
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGFKDWVFA LSNSMASSRP LLGSDPFFRD PHQEQDNHSQ APAAPQPVTL SEPPCSTSSD LEILPPLSQQ QVPLESLYQS SIDLNGKKHN PLAKIGGLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.