Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 2
- endoplasmic reticulum 5
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g007650.1.1 | Tomato | cytosol | 63.32 | 97.61 |
| VIT_11s0118g00260.t01 | Wine grape | cytosol, mitochondrion, plastid | 62.49 | 65.54 |
| KRH20190 | Soybean | cytosol | 54.84 | 57.74 |
| KRH03616 | Soybean | mitochondrion | 54.72 | 57.54 |
| CDY35813 | Canola | cytosol | 50.3 | 53.77 |
| GSMUA_Achr1P09910_001 | Banana | mitochondrion | 48.63 | 53.69 |
| Bra002291.1-P | Field mustard | cytosol | 50.18 | 53.64 |
| CDX92471 | Canola | cytosol | 50.18 | 53.64 |
| AT5G20300.4 | Thale cress | cytosol | 50.54 | 53.34 |
| Os12t0197400-01 | Rice | mitochondrion | 46.36 | 49.3 |
| Zm00001d035254_P001 | Maize | plastid | 45.64 | 48.72 |
| HORVU5Hr1G031380.1 | Barley | mitochondrion | 45.76 | 48.54 |
| EES15811 | Sorghum | mitochondrion | 45.52 | 48.47 |
| TraesCS5D01G120200.1 | Wheat | mitochondrion | 45.16 | 48.15 |
| TraesCS5A01G112900.1 | Wheat | mitochondrion | 44.8 | 47.83 |
| TraesCS5B01G109100.1 | Wheat | mitochondrion | 44.68 | 47.58 |
| PGSC0003DMT400024781 | Potato | cytosol | 37.28 | 29.46 |
| PGSC0003DMT400029640 | Potato | cytosol | 33.81 | 28.47 |
| PGSC0003DMT400013477 | Potato | cytosol | 10.16 | 28.24 |
| PGSC0003DMT400030414 | Potato | cytosol, plastid | 9.68 | 26.91 |
| PGSC0003DMT400004034 | Potato | cytosol | 38.11 | 23.32 |
| PGSC0003DMT400016119 | Potato | cytosol, nucleus, plastid | 32.5 | 19.99 |
Protein Annotations
| EntrezGene:102578154 | MapMan:23.1.2.2 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016817 |
| GO:GO:0045036 | InterPro:G_AIG1 | InterPro:IPR006703 | UniProt:M1D0Y3 | InterPro:P-loop_NTPase | PFAM:PF04548 |
| PFAM:PF11886 | EnsemblPlantsGene:PGSC0003DMG400030710 | PGSC:PGSC0003DMG400030710 | EnsemblPlants:PGSC0003DMT400078922 | PFscan:PS51720 | PANTHER:PTHR10903 |
| PANTHER:PTHR10903:SF68 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00993 | TMHMM:TMhelix | InterPro:TOC159_MAD | InterPro:Toc86_159 |
| UniParc:UPI0002956298 | SEG:seg | : | : | : | : |
Description
Protein translocase [Source:PGSC_GENE;Acc:PGSC0003DMG400030710]
Coordinates
chr7:+:3568007..3575046
Molecular Weight (calculated)
93709.8 Da
IEP (calculated)
6.866
GRAVY (calculated)
-0.332
Length
837 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLYEHLQLV LPPKVLYYKG QAALIVIILV LLCAGNMMSF KDWVLSQLIT KSVASSRPLL ASDNFLSEEH PDQGFDHPAH TADLVTTTRI DNTIQSSNDN
101: QEHTENTNNF HSQQRMGEDS FQSDFRVDEK PSPVVKIEAL QITFLRLLKR FGLSEDNLLV SKVLYRIQLA SLIRARESDL KRANLKIERA RVIAAEQEAA
201: GRPQLDFSFK ILVLGRTGVG KSSTINSIFD QSRAATNAFK PATDHIQEIV GTVNGIRVSF IDTPGLLPPS PSNIRKNKKI LHSVKRYLRK QTPDMVLYFE
301: RLDLINTGYS DFPLLKLITE VFGPAIWFNT ILVMTHSSFN LREGTNGYPV NYESFVTTCT DLVQHYIHQA VSDTKLENPV ILVENDPNCK TNNAGEKILP
401: NGQVWKSQLL LLCICTKVLS DVNTLLDFED SLKVGPSNVG RLPSLPHLLS SFLKHRAQIR HSGAENEIDE VSLLVSDDED DEYDQLPPIR ILTKSQFGRL
501: SGSQKKDYLD ELDYRETLYL KKQLIEEARR QREKRVSSSE GKAAPDDESD NQQEGPPEPV LLPDMAIPPS FDSDCPIHRY RCLITSEQWL ARPVLDPNGW
601: DHDVSFDGIN LESSAEIRKN IFASVNGQMS KDKQDFSIQS EFAAAFTNPG GPTYAVGLDV QSANKELICT IHSNAKVRNL RTNVTECGIS VIPFGDKYFL
701: GAKCEDSFTI GKRLKFNVNA GRMGGAGQAA YGGSFVATLR GRDYPVRNES LSLSMTVLSL NKEMVLSGNL QTDFRVSRGT NMSVSANLNN RKMGQVSIKT
801: SSSERMEIAF IALFSIARAL LRRKRNDQLI EDSLEAR
101: QEHTENTNNF HSQQRMGEDS FQSDFRVDEK PSPVVKIEAL QITFLRLLKR FGLSEDNLLV SKVLYRIQLA SLIRARESDL KRANLKIERA RVIAAEQEAA
201: GRPQLDFSFK ILVLGRTGVG KSSTINSIFD QSRAATNAFK PATDHIQEIV GTVNGIRVSF IDTPGLLPPS PSNIRKNKKI LHSVKRYLRK QTPDMVLYFE
301: RLDLINTGYS DFPLLKLITE VFGPAIWFNT ILVMTHSSFN LREGTNGYPV NYESFVTTCT DLVQHYIHQA VSDTKLENPV ILVENDPNCK TNNAGEKILP
401: NGQVWKSQLL LLCICTKVLS DVNTLLDFED SLKVGPSNVG RLPSLPHLLS SFLKHRAQIR HSGAENEIDE VSLLVSDDED DEYDQLPPIR ILTKSQFGRL
501: SGSQKKDYLD ELDYRETLYL KKQLIEEARR QREKRVSSSE GKAAPDDESD NQQEGPPEPV LLPDMAIPPS FDSDCPIHRY RCLITSEQWL ARPVLDPNGW
601: DHDVSFDGIN LESSAEIRKN IFASVNGQMS KDKQDFSIQS EFAAAFTNPG GPTYAVGLDV QSANKELICT IHSNAKVRNL RTNVTECGIS VIPFGDKYFL
701: GAKCEDSFTI GKRLKFNVNA GRMGGAGQAA YGGSFVATLR GRDYPVRNES LSLSMTVLSL NKEMVLSGNL QTDFRVSRGT NMSVSANLNN RKMGQVSIKT
801: SSSERMEIAF IALFSIARAL LRRKRNDQLI EDSLEAR
001: MKGFKDWVFA LSNSMASSRP LLGSDPFFRD PHQEQDNHSQ APAAPQPVTL SEPPCSTSSD LEILPPLSQQ QVPLESLYQS SIDLNGKKHN PLAKIGGLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
Arabidopsis Description
TOC90Translocase of chloroplast 90, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6S5G3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.