Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g007650.1.1 | Tomato | cytosol | 45.74 | 67.22 |
| KRH20190 | Soybean | cytosol | 64.41 | 64.65 |
| KRH03616 | Soybean | mitochondrion | 63.53 | 63.69 |
| PGSC0003DMT400078922 | Potato | endoplasmic reticulum | 65.54 | 62.49 |
| AT5G20300.4 | Thale cress | cytosol | 55.76 | 56.12 |
| GSMUA_Achr1P09910_001 | Banana | mitochondrion | 52.88 | 55.67 |
| CDX92471 | Canola | cytosol | 54.01 | 55.04 |
| CDY35813 | Canola | cytosol | 54.01 | 55.04 |
| Bra002291.1-P | Field mustard | cytosol | 53.76 | 54.79 |
| HORVU5Hr1G031380.1 | Barley | mitochondrion | 50.63 | 51.2 |
| Zm00001d035254_P001 | Maize | plastid | 50.13 | 51.02 |
| EES15811 | Sorghum | mitochondrion | 50.0 | 50.76 |
| TraesCS5A01G112900.1 | Wheat | mitochondrion | 49.75 | 50.64 |
| TraesCS5D01G120200.1 | Wheat | mitochondrion | 49.62 | 50.45 |
| TraesCS5B01G109100.1 | Wheat | mitochondrion | 49.62 | 50.38 |
| Os12t0197400-01 | Rice | mitochondrion | 49.37 | 50.06 |
| VIT_02s0109g00360.t01 | Wine grape | cytosol | 10.9 | 28.06 |
| VIT_16s0039g02670.t01 | Wine grape | cytosol | 10.65 | 27.6 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 41.73 | 26.12 |
| VIT_07s0005g00180.t01 | Wine grape | plastid | 39.35 | 21.43 |
| VIT_05s0020g01290.t01 | Wine grape | cytosol | 33.71 | 20.84 |
Protein Annotations
| EntrezGene:100266108 | wikigene:100266108 | MapMan:23.1.2.2 | Gene3D:3.40.50.300 | EMBL:AM431847 | ProteinID:CAN71551 |
| ProteinID:CAN71551.1 | ProteinID:CCB49911 | ProteinID:CCB49911.1 | UniProt:F6HCG5 | EMBL:FN595515 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016787 | GO:GO:0016817 | GO:GO:0045036 |
| InterPro:G_AIG1 | InterPro:IPR006703 | EntrezGene:LOC100266108 | wikigene:LOC100266108 | InterPro:P-loop_NTPase | PFAM:PF04548 |
| PFAM:PF11886 | PFscan:PS51720 | PANTHER:PTHR10903 | PANTHER:PTHR10903:SF68 | SUPFAM:SSF52540 | TIGR:TC61869 |
| TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD | InterPro:Toc86_159 | UniParc:UPI000198448C | ArrayExpress:VIT_11s0118g00260 | EnsemblPlantsGene:VIT_11s0118g00260 |
| EnsemblPlants:VIT_11s0118g00260.t01 | unigene:Vvi.14800 | RefSeq:XP_002263521 | RefSeq:XP_002263521.1 | RefSeq:XP_010656513.1 | SEG:seg |
Description
No Description!
Coordinates
chr11:-:5915318..5931419
Molecular Weight (calculated)
89238.6 Da
IEP (calculated)
7.127
GRAVY (calculated)
-0.343
Length
798 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSIKDWVFS QIISKSLVSS RPLPGSTGFF AEESLDEEFG DRGSDHTTNL VAPPAPANTS HHSNSNQENQ LHSSPQPVPG EGSYLSHHGT DGKRMDPLSK
101: VEDLQVKFLR LLRRIGQSQD NLVVAKVLYR LQLATLIGAG ESDLKRANLR SGKARAIAEE QEAAGLPELD FSFRILVLGK TGVGKSATIN SIFDQAKAVT
201: NAFQPATDRI REVVGTVNGI KITFIDTPGL LPSNTSNVRR NRKILLSVKR FIRKFPPDIV LYFERLDLIN MGYSDFPLLK LITEVFGPAI WFSTILVMTH
301: CSSDLPEGPN GFPVNYESYV TQCTDLVQHY VQQAVSDTRL ENPVLLVENH PYCRTNVMGK KILPNGQVWI SQFLLLCLCT KVLNDANALL RFQHSIQLGP
401: SSNTRLPSLP HLLSSFLRHR STLDPSETDN EIDEILFLEE EEVDEYDQLP PIRILTKSQF ERLTSSQKKD YLDELDYRET LYLKKQVKEE AQRRRESKLS
501: REVSLADSDN PDNKEVYPEA VMLPDMAVPL SFDSDCPAHR YRCLVMSDQW LVRPVLDPHG WDHDVGFDGI NLETTMDLKG NLIASVTGQM SKDKQDFSIQ
601: SECAAVYTDP RGPNYFVGLD VQSAGKDLIY TVHSNTKMRN LKHNLTECGF SMTSFRNKYC VGAKLEDTIS IGKRLKFVMN VGQMGGLEQV AYGGSFGATL
701: RGRDYPARKD SASLNMALLS LNKEMVMSGS IQSDFRSSRG TRMSINANLN SRKMGQICIK TSSSEHMEIA LVAFFSIFRA LLRRRAADGP SIEASGKE
101: VEDLQVKFLR LLRRIGQSQD NLVVAKVLYR LQLATLIGAG ESDLKRANLR SGKARAIAEE QEAAGLPELD FSFRILVLGK TGVGKSATIN SIFDQAKAVT
201: NAFQPATDRI REVVGTVNGI KITFIDTPGL LPSNTSNVRR NRKILLSVKR FIRKFPPDIV LYFERLDLIN MGYSDFPLLK LITEVFGPAI WFSTILVMTH
301: CSSDLPEGPN GFPVNYESYV TQCTDLVQHY VQQAVSDTRL ENPVLLVENH PYCRTNVMGK KILPNGQVWI SQFLLLCLCT KVLNDANALL RFQHSIQLGP
401: SSNTRLPSLP HLLSSFLRHR STLDPSETDN EIDEILFLEE EEVDEYDQLP PIRILTKSQF ERLTSSQKKD YLDELDYRET LYLKKQVKEE AQRRRESKLS
501: REVSLADSDN PDNKEVYPEA VMLPDMAVPL SFDSDCPAHR YRCLVMSDQW LVRPVLDPHG WDHDVGFDGI NLETTMDLKG NLIASVTGQM SKDKQDFSIQ
601: SECAAVYTDP RGPNYFVGLD VQSAGKDLIY TVHSNTKMRN LKHNLTECGF SMTSFRNKYC VGAKLEDTIS IGKRLKFVMN VGQMGGLEQV AYGGSFGATL
701: RGRDYPARKD SASLNMALLS LNKEMVMSGS IQSDFRSSRG TRMSINANLN SRKMGQICIK TSSSEHMEIA LVAFFSIFRA LLRRRAADGP SIEASGKE
001: MKGFKDWVFA LSNSMASSRP LLGSDPFFRD PHQEQDNHSQ APAAPQPVTL SEPPCSTSSD LEILPPLSQQ QVPLESLYQS SIDLNGKKHN PLAKIGGLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
Arabidopsis Description
TOC90Translocase of chloroplast 90, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6S5G3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.